RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 URGCPQ8TCY9 931 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 C8orf37Q96NL8 207 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 PCDH12Q9NPG4 1184 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 SNX9Q9Y5X1 595 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ST14Q9Y5Y6 855 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 V9GYQ6 96 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 PEX10O60683 326 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 CAPNS1P04632 268 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 PGAM1P18669 254 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 TSPAN8P19075 237 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ATP6V1B2P21281 511 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 NAMPTP43490 491 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 NSUN2Q08J23 767 aaKnown RBP eCLIP11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF829Q3KNS6 432 aaPredicted RBP11.89□□□□□ -0.51
CPSF3-202ENST00000460593 MAP7D1Q3KQU3 841 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 AGKQ53H12 422 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ANKRD26P1Q6NSI1 321 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 DCLRE1AQ6PJP8 1040 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ABHD15Q6UXT9 468 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 EPHX4Q8IUS5 362 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 CCDC185Q8N715 623 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 HTR3CQ8WXA8 447 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 SGCDQ92629 289 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 TFAP2CQ92754 450 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ASB9Q96DX5 294 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 CNDP1Q96KN2 507 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 HNRNPABQ99729 332 aaKnown RBP11.89□□□□□ -0.51
CPSF3-202ENST00000460593 MTG1Q9BT17 334 aaPredicted RBP11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ANKRD60Q9BZ19 345 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 TNFRSF12AQ9NP84 129 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 RNF19AQ9NV58 838 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 OXSMQ9NWU1 459 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 GTSE1Q9NYZ3 720 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 RAP2CQ9Y3L5 183 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 DGKBQ9Y6T7 804 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ATP6AP2A0A1C7CYW4 349 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 RNF103O00237 685 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 ATP6AP2O75787 350 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 MATN1P21941 496 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 POLR2IP36954 125 aaKnown RBP11.88□□□□□ -0.51
CPSF3-202ENST00000460593 RHDQ02161 417 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 PDK2Q15119 407 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 CCDC153Q494R4 210 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 XKR3Q5GH77 459 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 PMF1Q6P1K2 205 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 SLC2A7Q6PXP3 512 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 VSIG10LQ86VR7 867 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 TMEM126BQ8IUX1 230 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 NDRG1Q92597 394 aaKnown RBP11.88□□□□□ -0.51
CPSF3-202ENST00000460593 RBBP8Q99708 897 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF385DQ9H6B1 395 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 IARS2Q9NSE4 1012 aaKnown RBP11.88□□□□□ -0.51
CPSF3-202ENST00000460593 UBP1Q9NZI7 540 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 BCAP29Q9UHQ4 241 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 TSPAN16Q9UKR8 245 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 SQORQ9Y6N5 450 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 A0A087WXM4 84 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 KPNA7A9QM74 516 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 HCRTO43612 131 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 DPYSQ14117 519 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 CARTPTQ16568 116 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 C6orf10Q5SRN2 563 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 CERCAMQ5T4B2 595 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 KCTD8Q6ZWB6 473 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 ATG4CQ96DT6 458 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 TMEM176AQ96HP8 235 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 KCTD15Q96SI1 283 aaPredicted RBP11.88□□□□□ -0.51
CPSF3-202ENST00000460593 CYP4F12Q9HCS2 524 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 RNF146Q9NTX7 359 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 SPATA7Q9P0W8 599 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 SLC27A5Q9Y2P5 690 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 QSER1Q2KHR3 1735 aa11.88□□□□□ -0.51
CPSF3-202ENST00000460593 RNF103-CHMP3A0A140T963 221 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 LSM1O15116 133 aaKnown RBP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 MFSD11O43934 449 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 E2F6O75461 281 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 INHBBP09529 407 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 SDC4P31431 198 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 ARL2P36404 184 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 GARSP41250 739 aaKnown RBP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 SLC7A2P52569 658 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 GRM3Q14832 879 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 INSCQ1MX18 579 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 REP15Q6BDI9 236 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 ILDR2Q71H61 639 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 C1orf127Q8N9H9 656 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 BPIFB6Q8NFQ5 453 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 GABPB2Q8TAK5 448 aaPredicted RBP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 RUVBL2Q9Y230 463 aaKnown RBP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 ARID2Q68CP9 1835 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 ANKRD12Q6UB98 2062 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 HEATR9A2RTY3 570 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 TNNC2P02585 160 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 PLK1P53350 603 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 NCBP2-AS2Q69YL0 99 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 DNAJC14Q6Y2X3 702 aaPredicted RBP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 PIWIL3Q7Z3Z3 882 aaKnown RBP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 SPPL2CQ8IUH8 684 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 RNF149Q8NC42 400 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 ADI1Q9BV57 179 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms