RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PRPSAP2O60256 369 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 LRCH4O75427 683 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 CD27P26842 260 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 CSNK1EP49674 416 aaKnown RBP13□□□□□ -0.33
PRPF40A-203ENST00000448428 DNA2P51530 1060 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 ATXN3P54252 364 aaPredicted RBP13□□□□□ -0.33
PRPF40A-203ENST00000448428 ADPRHP54922 357 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 BNC1Q01954 994 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 ARSIQ5FYB1 569 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 LEKR1Q6ZMV7 388 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 DPY19L3Q6ZPD9 716 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 MINDY1Q8N5J2 469 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 TMIEQ8NEW7 156 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 OR8K1Q8NGG5 319 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 CCDC114Q96M63 670 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 DNAJC7Q99615 494 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 CEP44Q9C0F1 390 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 KLC2Q9H0B6 622 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 CATSPERBQ9H7T0 1116 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 EBF2Q9HAK2 575 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 TM9SF3Q9HD45 589 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 HPCAL4Q9UM19 191 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 NENFQ9UMX5 172 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 FCF1Q9Y324 198 aaKnown RBP13□□□□□ -0.33
PRPF40A-203ENST00000448428 CACNA1EQ15878 2313 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 TMEM131Q92545 1883 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3DA0A087WVF3 549 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3IA0A087WXS9 549 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3EA0A087X179 549 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3KA0A087X1G2 549 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3FA6NER0 549 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 EIF3CLB5ME19 914 aaKnown RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3LB9A6J9 549 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 RASA4BC9J798 803 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 EEF2KO00418 725 aaKnown RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 RASA4O43374 803 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 KCNK5O95279 499 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 CYP1A2P05177 515 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3HP0C7X1 549 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 HTR7P34969 479 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 RECQLP46063 649 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 CCR5P51681 352 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 YBEYP58557 167 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TPI1P60174 286 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 GRIK2Q13002 908 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TRIM14Q14142 442 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 ACAP1Q15027 740 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 CARD16Q5EG05 197 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 AGBL4Q5VU57 503 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3GQ6DHY5 549 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3CQ6IPX1 549 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TBC1D3Q8IZP1 549 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 UMODL1-AS1Q8N2C9 162 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 PCDH20Q8N6Y1 951 aaKnown RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 ISG20Q96AZ6 181 aaKnown RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 ARHGEF26Q96DR7 871 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 HMCESQ96FZ2 354 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 BTBD6Q96KE9 485 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 KCTD15Q96SI1 283 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 EIF3CQ99613 913 aaKnown RBP12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 NCAPGQ9BPX3 1015 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 NUP85Q9BW27 656 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 OSGEPQ9NPF4 335 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 IL36AQ9UHA7 158 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 WASF2Q9Y6W5 498 aa12.99□□□□□ -0.33
PRPF40A-203ENST00000448428 TP53BP1Q12888 1972 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 A0A1B0GVT2 93 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 A0A1W2PPC4 97 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 KPNA3O00505 521 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 FGF10O15520 208 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 SLC7A4O43246 635 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PLRG1O43660 514 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 BUB1O43683 1085 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 LEFTY1O75610 366 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 GJB3O75712 270 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PRNPP04156 253 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 TCF4P15884 667 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 IL1R2P27930 398 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PCK1P35558 622 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 AFF3P51826 1226 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 ADKP55263 362 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 GEMIN4P57678 1058 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 TAS2R38P59533 333 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 SERINC3Q13530 473 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PIGHQ14442 188 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 ASTE1Q2TB18 679 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PPP6R3Q5H9R7 873 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PIP5KL1Q5T9C9 394 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 ZNF354CQ86Y25 554 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PSTKQ8IV42 348 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PLPP6Q8IY26 295 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 GRIN3AQ8TCU5 1115 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 ARRDC3Q96B67 414 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 HEPHQ9BQS7 1158 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 ZDHHC5Q9C0B5 715 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 KDM4CQ9H3R0 1056 aa12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 DNAAF2Q9NVR5 837 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 HECAQ9UBI9 543 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-203ENST00000448428 PCNX2A6NKB5 2137 aa12.97□□□□□ -0.33
PRPF40A-203ENST00000448428 ZSCAN5CA6NGD5 496 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms