RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 RABGEF1Q9UJ41 708 aa8.66□□□□□ -1.02
PTPN3-204ENST00000446349 POLR1DQ9Y2S0 133 aa8.66□□□□□ -1.02
PTPN3-204ENST00000446349 CCDC154A6NI56 674 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 CCT8L1PA6NM43 557 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 E5RJQ4 531 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 CCNB1P14635 433 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 HSD17B3P37058 310 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 MARSP56192 900 aaKnown RBP8.65□□□□□ -1.02
PTPN3-204ENST00000446349 FPGSQ05932 587 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 KLC1Q07866 573 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 BIKQ13323 160 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 C9orf57Q5W0N0 161 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 KIAA0895Q8NCT3 520 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 TMEM161BQ8NDZ6 487 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 MAGED4Q96JG8 741 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 EXO5Q9H790 373 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 STMN3Q9NZ72 180 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 ZNF112Q9UJU3 913 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 BTBD19C9JJ37 291 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 ACADSP16219 412 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 KDELR1P24390 212 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 CCL23P55773 120 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 PFKPQ01813 784 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 TERF2Q15554 542 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 PTF1AQ7RTS3 328 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 ZNF571Q7Z3V5 609 aaPredicted RBP8.65□□□□□ -1.02
PTPN3-204ENST00000446349 TATDN2Q93075 761 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 CAVIN3Q969G5 261 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 USE1Q9NZ43 259 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 RPS6KA6Q9UK32 745 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 HNRNPH1P31943 449 aaKnown RBP8.65□□□□□ -1.02
PTPN3-204ENST00000446349 RPS7P62081 194 aaKnown RBP8.65□□□□□ -1.02
PTPN3-204ENST00000446349 LAPTM5Q13571 262 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 ATP13A5Q4VNC0 1218 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 KDM7AQ6ZMT4 941 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 ERP27Q96DN0 273 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 PRICKLE1Q96MT3 831 aaPredicted RBP8.65□□□□□ -1.02
PTPN3-204ENST00000446349 RIBC2Q9H4K1 309 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 C11orf49Q9H6J7 331 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 PRKAG3Q9UGI9 489 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 NDUFAF1Q9Y375 327 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 OR10H2O60403 315 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 SLC25A12O75746 678 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 ITGAVP06756 1048 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 SMAD3P84022 425 aaKnown RBP8.65□□□□□ -1.02
PTPN3-204ENST00000446349 CASP12Q6UXS9 341 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 KIAA0319LQ8IZA0 1049 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 RP9Q8TA86 221 aaKnown RBP8.65□□□□□ -1.02
PTPN3-204ENST00000446349 KCTD13Q8WZ19 329 aa8.65□□□□□ -1.02
PTPN3-204ENST00000446349 KCTD14Q9BQ13 255 aaPredicted RBP8.65□□□□□ -1.02
PTPN3-204ENST00000446349 SLC25A52Q3SY17 297 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 ZNF470Q6ECI4 717 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 NEPROQ6NW34 567 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 FUBP3Q96I24 572 aaKnown RBP eCLIP8.65□□□□□ -1.03
PTPN3-204ENST00000446349 S100A13Q99584 98 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 CNPPD1Q9BV87 410 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 HHATLQ9HCP6 504 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 ALG13Q9NP73 1137 aaKnown RBP8.65□□□□□ -1.03
PTPN3-204ENST00000446349 ENDOD1O94919 500 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 CPSF4O95639 269 aaKnown RBP8.65□□□□□ -1.03
PTPN3-204ENST00000446349 GABRR2P28476 465 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 MRPS5P82675 430 aaKnown RBP8.65□□□□□ -1.03
PTPN3-204ENST00000446349 TSNQ15631 228 aaKnown RBP8.65□□□□□ -1.03
PTPN3-204ENST00000446349 KCNA10Q16322 511 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 FAM71AQ8IYT1 594 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 HGH1Q9BTY7 390 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.65□□□□□ -1.03
PTPN3-204ENST00000446349 SNX8Q9Y5X2 465 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 ZNF780BQ9Y6R6 833 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 MYH11P35749 1972 aa8.65□□□□□ -1.03
PTPN3-204ENST00000446349 MEIS2O14770 477 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 ECDO95905 644 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-204ENST00000446349 FGRP09769 529 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 S100A3P33764 101 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 TMED1Q13445 227 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 DENND1CQ8IV53 801 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 FNDC5Q8NAU1 212 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 EBNA1BP2Q99848 306 aaKnown RBP8.64□□□□□ -1.03
PTPN3-204ENST00000446349 TCF7L2Q9NQB0 619 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 MAP10Q9P2G4 905 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 MARCOQ9UEW3 520 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-204ENST00000446349 GRIN2DO15399 1336 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 SMIM31A0A1B0GVY4 71 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 SPTLC1O15269 473 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 KLK7P49862 253 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 ST13P50502 369 aaKnown RBP8.64□□□□□ -1.03
PTPN3-204ENST00000446349 LRRC32Q14392 662 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 TPGS1Q6ZTW0 290 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 GSPT2Q8IYD1 628 aaKnown RBP8.64□□□□□ -1.03
PTPN3-204ENST00000446349 GJD3Q8N144 294 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 NSMCE2Q96MF7 247 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 PNMA5Q96PV4 448 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 ACBD6Q9BR61 282 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 TBC1D23Q9NUY8 699 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 ELOVL2Q9NXB9 296 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 SLIT2O94813 1529 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 XRN1Q8IZH2 1706 aaKnown RBP8.64□□□□□ -1.03
PTPN3-204ENST00000446349 KRT34O76011 436 aa8.64□□□□□ -1.03
PTPN3-204ENST00000446349 MRPS25P82663 173 aaKnown RBP8.64□□□□□ -1.03
PTPN3-204ENST00000446349 DDR2Q16832 855 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms