RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 WHAMMP3Q1A5X7 153 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 ACCSLQ4AC99 568 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 HSF5Q4G112 596 aaPredicted RBP16.07■□□□□ 0.16
USP40-206ENST00000443711 C2orf27AQ580R0 203 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 HEATR6Q6AI08 1181 aaKnown RBP16.07■□□□□ 0.16
USP40-206ENST00000443711 SERPINA13PQ6UXR4 307 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 B4GALNT4Q76KP1 1039 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 CHPFQ8IZ52 775 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 FLCNQ8NFG4 579 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 HTR3CQ8WXA8 447 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 MAML1Q92585 1016 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 MAGOHBQ96A72 148 aaKnown RBP16.07■□□□□ 0.16
USP40-206ENST00000443711 ISG20Q96AZ6 181 aaKnown RBP16.07■□□□□ 0.16
USP40-206ENST00000443711 CEP44Q9C0F1 390 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 RBM12Q9NTZ6 932 aaKnown RBP16.07■□□□□ 0.16
USP40-206ENST00000443711 SEPT3Q9UH03 358 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 SUN2Q9UH99 717 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 ZNF148Q9UQR1 794 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 ACTL7AQ9Y615 435 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 STON1Q9Y6Q2 735 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 TTC28Q96AY4 2481 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 TECTAO75443 2155 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 ANTXRLA6NF34 631 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 K7ERQ8 282 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 KCNK1O00180 336 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 PDE2AO00408 941 aaPredicted RBP16.06■□□□□ 0.16
USP40-206ENST00000443711 SMAD6O43541 496 aaKnown RBP16.06■□□□□ 0.16
USP40-206ENST00000443711 STK10O94804 968 aaKnown RBP16.06■□□□□ 0.16
USP40-206ENST00000443711 TMCC1O94876 653 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 KLF8O95600 359 aaPredicted RBP16.06■□□□□ 0.16
USP40-206ENST00000443711 JCHAINP01591 159 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 VAV1P15498 845 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 RBL1P28749 1068 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 STIP1P31948 543 aaKnown RBP16.06■□□□□ 0.16
USP40-206ENST00000443711 SLC10A7Q0GE19 358 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 FZD5Q13467 585 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 ENPP2Q13822 863 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 ZNF235Q14590 738 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 CYTH1Q15438 398 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 CYP1B1Q16678 543 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 TEX26Q8N6G2 289 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 C12orf50Q8NA57 414 aaPredicted RBP16.06■□□□□ 0.16
USP40-206ENST00000443711 PJA1Q8NG27 643 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 CLDN23Q96B33 292 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 MYO19Q96H55 970 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 ACOX2Q99424 681 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 IL12RB2Q99665 862 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 CINPQ9BW66 212 aaPredicted RBP16.06■□□□□ 0.16
USP40-206ENST00000443711 TMEM245Q9H330 911 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 C10orf88Q9H8K7 445 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 HAUS2Q9NVX0 235 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 SEPT10Q9P0V9 454 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 AMACRQ9UHK6 382 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 FCF1Q9Y324 198 aaKnown RBP16.06■□□□□ 0.16
USP40-206ENST00000443711 SIT1Q9Y3P8 196 aa16.06■□□□□ 0.16
USP40-206ENST00000443711 TMEM221A6NGB7 291 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 TTC34A8MYJ7 566 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 CCDC188H7C350 402 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 M0R296 226 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 KCNN4O15554 427 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 PHF2O75151 1096 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 ITGAVP06756 1048 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 CHRM1P11229 460 aaPredicted RBP16.05■□□□□ 0.16
USP40-206ENST00000443711 HSPA9P38646 679 aaKnown RBP16.05■□□□□ 0.16
USP40-206ENST00000443711 IL12RB1P42701 662 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 MMP13P45452 471 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 RHOAP61586 193 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 LMNB2Q03252 620 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 OASLQ15646 514 aaKnown RBP16.05■□□□□ 0.16
USP40-206ENST00000443711 EOGTQ5NDL2 527 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 C22orf39Q6P5X5 142 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 ALLCQ8N6M5 410 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 PCDH20Q8N6Y1 951 aaKnown RBP16.05■□□□□ 0.16
USP40-206ENST00000443711 IL17RCQ8NAC3 791 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 ATL2Q8NHH9 583 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 RPLP0P6Q8NHW5 317 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 FRS2Q8WU20 508 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 PSKH2Q96QS6 385 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 VAT1Q99536 393 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 TMEM121Q9BTD3 319 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 USP29Q9HBJ7 922 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 ZDHHC4Q9NPG8 344 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 RBM22Q9NW64 420 aaKnown RBP eCLIP16.05■□□□□ 0.16
USP40-206ENST00000443711 CACNA2D2Q9NY47 1150 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 MRFAP1Q9Y605 127 aa16.05■□□□□ 0.16
USP40-206ENST00000443711 MUC22E2RYF6 1773 aaPredicted RBP16.05■□□□□ 0.16
USP40-206ENST00000443711 EDDM13A0A1B0GTR0 161 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 TARSL2A2RTX5 802 aaKnown RBP16.04■□□□□ 0.16
USP40-206ENST00000443711 CHURC1-FNTBB4DL54 471 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 WASH3PC4AMC7 463 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 RNF103O00237 685 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 ATG13O75143 517 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 EPHX1P07099 455 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 PTPN3P26045 913 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 CHRNA3P32297 505 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 COILP38432 576 aaPredicted RBP16.04■□□□□ 0.16
USP40-206ENST00000443711 WASP42768 502 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 RECQLP46063 649 aaPredicted RBP16.04■□□□□ 0.16
USP40-206ENST00000443711 RPS9P46781 194 aaKnown RBP16.04■□□□□ 0.16
USP40-206ENST00000443711 HNRNPA1L2Q32P51 320 aaKnown RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms