RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 PRPSAP1Q14558 356 aa12□□□□□ -0.49
CD44-209ENST00000433892 ZNF460Q14592 562 aa12□□□□□ -0.49
CD44-209ENST00000433892 POU6F1Q14863 301 aa12□□□□□ -0.49
CD44-209ENST00000433892 LSM12Q3MHD2 195 aaKnown RBP12□□□□□ -0.49
CD44-209ENST00000433892 LIPMQ5VYY2 423 aa12□□□□□ -0.49
CD44-209ENST00000433892 SEL1L3Q68CR1 1132 aa12□□□□□ -0.49
CD44-209ENST00000433892 NAPEPLDQ6IQ20 393 aa12□□□□□ -0.49
CD44-209ENST00000433892 ZYG11AQ6WRX3 759 aa12□□□□□ -0.49
CD44-209ENST00000433892 SLC41A1Q8IVJ1 513 aa12□□□□□ -0.49
CD44-209ENST00000433892 SPATA6LQ8N4H0 392 aa12□□□□□ -0.49
CD44-209ENST00000433892 VAT1Q99536 393 aa12□□□□□ -0.49
CD44-209ENST00000433892 UNKQ9C0B0 810 aaKnown RBP12□□□□□ -0.49
CD44-209ENST00000433892 KLHL4Q9C0H6 718 aa12□□□□□ -0.49
CD44-209ENST00000433892 DRC3Q9H069 523 aa12□□□□□ -0.49
CD44-209ENST00000433892 SIK2Q9H0K1 926 aa12□□□□□ -0.49
CD44-209ENST00000433892 SPATS2LQ9NUQ6 558 aaKnown RBP12□□□□□ -0.49
CD44-209ENST00000433892 ZDHHC2Q9UIJ5 367 aa12□□□□□ -0.49
CD44-209ENST00000433892 RAP2CQ9Y3L5 183 aa12□□□□□ -0.49
CD44-209ENST00000433892 F9P00740 461 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 SLC35E2BP0CK96 405 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 TFEBP19484 476 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 PIK3R1P27986 724 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 NUMBP49757 651 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 RPL14P50914 215 aaKnown RBP11.99□□□□□ -0.49
CD44-209ENST00000433892 CTBP1Q13363 440 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 MSLNQ13421 630 aaPredicted RBP11.99□□□□□ -0.49
CD44-209ENST00000433892 HNRNPDQ14103 355 aaKnown RBP11.99□□□□□ -0.49
CD44-209ENST00000433892 TRIP10Q15642 601 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 TMEM198Q66K66 360 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 TAC4Q86UU9 113 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 KBTBD6Q86V97 674 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 SNX32Q86XE0 403 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 DENND6AQ8IWF6 608 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 FSTL5Q8N475 847 aaPredicted RBP11.99□□□□□ -0.49
CD44-209ENST00000433892 DPF3Q92784 378 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 LPPQ93052 612 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 ZNF419Q96HQ0 510 aaPredicted RBP11.99□□□□□ -0.49
CD44-209ENST00000433892 TSNARE1Q96NA8 513 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 PAAF1Q9BRP4 392 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 KIFC1Q9BW19 673 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 RHOJQ9H4E5 214 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 PAPOLBQ9NRJ5 636 aaKnown RBP11.99□□□□□ -0.49
CD44-209ENST00000433892 PDP2Q9P2J9 529 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 SLC45A1Q9Y2W3 748 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 C17orf102A2RUQ5 167 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 H3BNX3 289 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 GRID2O43424 1007 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 VAPBO95292 243 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 JUNP05412 331 aaKnown RBP11.99□□□□□ -0.49
CD44-209ENST00000433892 APOA4P06727 396 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 THRAP10827 490 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 CSRP3P50461 194 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 MPP1Q00013 466 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 SLC30A9Q6PML9 568 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 EP400NLQ6ZTU2 488 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 TMC7Q7Z402 723 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 CENPLQ8N0S6 344 aaPredicted RBP11.99□□□□□ -0.49
CD44-209ENST00000433892 IPMKQ8NFU5 416 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 GBP5Q96PP8 586 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 FTHL17Q9BXU8 183 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 MIOSQ9NXC5 875 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 FLRT1Q9NZU1 646 aa11.99□□□□□ -0.49
CD44-209ENST00000433892 RGSL1A5PLK6 1076 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 CASTOR2A6NHX0 329 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 UNCXA6NJT0 531 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 HAS3O00219 553 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 AHCYL1O43865 530 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 CABYRO75952 493 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 DDHD2O94830 711 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 THP07101 528 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 MSX2P35548 267 aaPredicted RBP11.98□□□□□ -0.49
CD44-209ENST00000433892 HADHAP40939 763 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 SLC12A1Q13621 1099 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 NXNQ6DKJ4 435 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 PM20D1Q6GTS8 502 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 ESRP1Q6NXG1 681 aaKnown RBP11.98□□□□□ -0.49
CD44-209ENST00000433892 DCLRE1AQ6PJP8 1040 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 KDELC2Q7Z4H8 507 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 LINC00523Q86TU6 105 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 CEP97Q8IW35 865 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 TMEM86AQ8N2M4 240 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 SMARCD1Q96GM5 515 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 MARK4Q96L34 752 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 OMDQ99983 421 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 ZDHHC7Q9NXF8 308 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 MID2Q9UJV3 735 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 ANKRD6Q9Y2G4 727 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 FAM163BP0C2L3 166 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 BDNFP23560 247 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 PAPOLAP51003 745 aaKnown RBP11.98□□□□□ -0.49
CD44-209ENST00000433892 DLG1Q12959 904 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 MED21Q13503 144 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 PDCD2Q16342 344 aaPredicted RBP11.98□□□□□ -0.49
CD44-209ENST00000433892 FAM110CQ1W6H9 321 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 PAN2Q504Q3 1202 aaKnown RBP11.98□□□□□ -0.49
CD44-209ENST00000433892 PKN3Q6P5Z2 889 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 ACAD11Q709F0 780 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 ANKRD23Q86SG2 305 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 MFSD6LQ8IWD5 586 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 DSELQ8IZU8 1212 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms