RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 DTLQ9NZJ0 730 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 SUN2Q9UH99 717 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 IPO11Q9UI26 975 aaKnown RBP12.67□□□□□ -0.38
USP40-205ENST00000430158 EFR3BQ9Y2G0 817 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 DOCK9Q9BZ29 2069 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 CCDC163A0A0D9SF12 145 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 EDDM13A0A1B0GTR0 161 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 TARSL2A2RTX5 802 aaKnown RBP12.66□□□□□ -0.38
USP40-205ENST00000430158 ZSCAN5CA6NGD5 496 aaPredicted RBP12.66□□□□□ -0.38
USP40-205ENST00000430158 RNF103O00237 685 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 ZSCAN12O43309 604 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 EPHX1P07099 455 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 CSTF1Q05048 431 aaKnown RBP12.66□□□□□ -0.38
USP40-205ENST00000430158 IL10RBQ08334 325 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 LLGL1Q15334 1064 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 SDE2Q6IQ49 451 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 C22orf39Q6P5X5 142 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 NPNTQ6UXI9 565 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 LEKR1Q6ZMV7 388 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 BBS12Q6ZW61 710 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 LRRC49Q8IUZ0 686 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 PLPP6Q8IY26 295 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 MDGA1Q8NFP4 955 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 OR2A12Q8NGT7 310 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 FATE1Q969F0 183 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 RBM41Q96IZ5 413 aaKnown RBP12.66□□□□□ -0.38
USP40-205ENST00000430158 MRGPRX1Q96LB2 322 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 OLFM3Q96PB7 478 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 CEP44Q9C0F1 390 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 SLC6A17Q9H1V8 727 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 RSPH9Q9H1X1 276 aaPredicted RBP12.66□□□□□ -0.38
USP40-205ENST00000430158 TRMT1Q9NXH9 659 aaKnown RBP12.66□□□□□ -0.38
USP40-205ENST00000430158 SLC25A13Q9UJS0 675 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 SLC8A2Q9UPR5 921 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 FCF1Q9Y324 198 aaKnown RBP12.66□□□□□ -0.38
USP40-205ENST00000430158 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP40-205ENST00000430158 ANKRD36A6QL64 1941 aa12.66□□□□□ -0.38
USP40-205ENST00000430158 FAM186AA6NE01 2351 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 TCRBV21S2A2A0A5A6 115 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 DFFAO00273 331 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 CST8O60676 142 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 LILRB5O75023 590 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 APBB3O95704 486 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 NUDT7P0C024 238 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 PECAM1P16284 738 aaPredicted RBP12.65□□□□□ -0.38
USP40-205ENST00000430158 NDUFV2P19404 249 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 SERPINB6P35237 376 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 GARSP41250 739 aaKnown RBP12.65□□□□□ -0.38
USP40-205ENST00000430158 PXNP49023 591 aaPredicted RBP12.65□□□□□ -0.38
USP40-205ENST00000430158 ST8SIA6P61647 398 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 KLF1Q13351 362 aaPredicted RBP12.65□□□□□ -0.38
USP40-205ENST00000430158 Q6ZVU0 165 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 METTL3Q86U44 580 aaKnown RBP12.65□□□□□ -0.38
USP40-205ENST00000430158 RFX6Q8HWS3 928 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 STK40Q8N2I9 435 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 ATP11CQ8NB49 1132 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 ZBTB44Q8NCP5 570 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 TSTD1Q8NFU3 115 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 TRIM58Q8NG06 486 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 OR2T3Q8NH03 318 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 CASKIN2Q8WXE0 1202 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 MAML1Q92585 1016 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 ERLEC1Q96DZ1 483 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 NSMCE3Q96MG7 304 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 OSBPL8Q9BZF1 889 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 KCNH6Q9H252 994 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 LHX3Q9UBR4 397 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 PI4KAP42356 2102 aa12.65□□□□□ -0.38
USP40-205ENST00000430158 CEP192Q8TEP8 1941 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 C2orf72A6NCS6 295 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 C10orf142B7Z368 130 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 APOL1O14791 398 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 MCF2LO15068 1137 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 MUSKO15146 869 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 TMCC1O94876 653 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 MAP3K6O95382 1288 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 CTSLP07711 333 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 ZFXP17010 805 aaPredicted RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 FNTBP49356 437 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 GEMIN4P57678 1058 aaKnown RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 RPS14P62263 151 aaKnown RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 ZNF211Q13398 564 aaPredicted RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 TFDP2Q14188 446 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 ZFYVE27Q5T4F4 411 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 DPY19L3Q6ZPD9 716 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 WDR5BQ86VZ2 330 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 TMPRSS6Q8IU80 811 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 TEX26Q8N6G2 289 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 PCDH20Q8N6Y1 951 aaKnown RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 UBL4BQ8N7F7 174 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 CHST14Q8NCH0 376 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 LRRN4Q8WUT4 740 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 FAM131CQ96AQ9 280 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 HDAC11Q96DB2 347 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 ZNF599Q96NL3 588 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 HEMGNQ9BXL5 484 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 FAM126AQ9BYI3 521 aaPredicted RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 FBRSQ9HAH7 460 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 POLMQ9NP87 494 aaPredicted RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 SAE1Q9UBE0 346 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms