RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SYBUQ9NX95 663 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 FAM47DPA6NHR8 397 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 A6NL46 340 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 SNPHO15079 494 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 CSDE1O75534 798 aaKnown RBP9.96□□□□□ -0.81
USP54-205ENST00000424265 FGBP02675 491 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 KRT1P04264 644 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 WEE2P0C1S8 567 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 CTAG1AP78358 180 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 OTUD4Q01804 1114 aaKnown RBP9.96□□□□□ -0.81
USP54-205ENST00000424265 FAPQ12884 760 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 ZBTB41Q5SVQ8 909 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 FAM102AQ5T9C2 384 aaPredicted RBP9.96□□□□□ -0.81
USP54-205ENST00000424265 LPCAT4Q643R3 524 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 ANKS3Q6ZW76 656 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 DEPDC4Q8N2C3 294 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 FIBCD1Q8N539 461 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 NEURL2Q9BR09 285 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 GPAMQ9HCL2 828 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 RPRD1BQ9NQG5 326 aaKnown RBP9.96□□□□□ -0.81
USP54-205ENST00000424265 A0A088AWK7 358 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 OR6C75A6NL08 312 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 B4GALT5O43286 388 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 ASS1P00966 412 aaKnown RBP9.96□□□□□ -0.82
USP54-205ENST00000424265 SLC2A3P11169 496 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CLK1P49759 484 aaKnown RBP9.96□□□□□ -0.82
USP54-205ENST00000424265 LBX1P52954 281 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 C1QBPQ07021 282 aaKnown RBP9.96□□□□□ -0.82
USP54-205ENST00000424265 PPM1LQ5SGD2 360 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 USP43Q70EL4 1123 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CCDC103Q8IW40 242 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CCDC105Q8IYK2 499 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 ZNF486Q96H40 463 aaPredicted RBP9.96□□□□□ -0.82
USP54-205ENST00000424265 BTBD9Q96Q07 612 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 DNAJB4Q9UDY4 337 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CDH9Q9ULB4 789 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CFL2Q9Y281 166 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 PCDHB5Q9Y5E4 795 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 KRBA1A5PL33 1030 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 HAS3O00219 553 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 ZBTB24O43167 697 aaPredicted RBP9.96□□□□□ -0.82
USP54-205ENST00000424265 ITM2AO43736 263 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CTRB1P17538 263 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 M6PRP20645 277 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 EPC2Q52LR7 807 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CTRB2Q6GPI1 263 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CTAGE3PQ8IX95 158 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 ZC3H3Q8IXZ2 948 aaKnown RBP9.96□□□□□ -0.82
USP54-205ENST00000424265 KRT35Q92764 455 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 NRBF2Q96F24 287 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 PI4K2AQ9BTU6 479 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.96□□□□□ -0.82
USP54-205ENST00000424265 HEY2Q9UBP5 337 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 CHKBQ9Y259 395 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 STXBP5LQ9Y2K9 1186 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 GPSM3Q9Y4H4 160 aa9.96□□□□□ -0.82
USP54-205ENST00000424265 FOXN3O00409 490 aaPredicted RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 SULT1B1O43704 296 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 ITIH1P19827 911 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 CA4P22748 312 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 SCNN1GP51170 649 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TLE2Q04725 743 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 KDSRQ06136 332 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 SQLEQ14534 574 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TDRD10Q5VZ19 366 aaKnown RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 UTS2BQ765I0 119 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 STX12Q86Y82 276 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 ASCC1Q8N9N2 400 aaKnown RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 GLIS3Q8NEA6 775 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TOX2Q96NM4 488 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TCF7L2Q9NQB0 619 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 PDLIM7Q9NR12 457 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 POLHQ9Y253 713 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 FAM187AA6NFU0 413 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 SIGLEC16A6NMB1 481 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 DNALI1O14645 258 aaPredicted RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 BCL10O95999 233 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 PPP3CAQ08209 521 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TRAF2Q12933 501 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 EFHC2Q5JST6 749 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 MIIPQ5JXC2 388 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 AMIGO2Q86SJ2 522 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TMPRSS6Q8IU80 811 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 PLPP6Q8IY26 295 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 KBTBD2Q8IY47 623 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 PYDC1Q8WXC3 89 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 RSAD2Q8WXG1 361 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 C18orf25Q96B23 403 aaPredicted RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 TP63Q9H3D4 680 aaPredicted RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 ELAC1Q9H777 363 aaKnown RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 PPARGC1AQ9UBK2 798 aaKnown RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 POC1B-GALNT4F8VUJ3 575 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 H3BNX3 289 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 PRRG1O14668 218 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 F9P00740 461 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 POMCP01189 267 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 PCNAP12004 261 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TRIM23P36406 574 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 CDONQ4KMG0 1287 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 LVRNQ6Q4G3 990 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms