RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 TSNAXIP1Q2TAA8 658 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 CCDC153Q494R4 210 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 PKN3Q6P5Z2 889 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 EXOC3L1Q86VI1 746 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 KCNMB4Q86W47 210 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 C7orf61Q8IZ16 206 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 DIS3LQ8TF46 1054 aaKnown RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 HERVK_113Q902F9 699 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 SIKE1Q9BRV8 207 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 CORO1CQ9ULV4 474 aaPredicted RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 IGLV3-10A0A075B6K4 115 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 ATP5HO75947 161 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 HSPA1AP0DMV8 641 aaKnown RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 HSPA1BP0DMV9 641 aaKnown RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 VAV1P15498 845 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 CRABP2P29373 138 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 ZBTB16Q05516 673 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 SERINC3Q13530 473 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 DMC1Q14565 340 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 CFAP157Q5JU67 520 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 STEAP4Q687X5 459 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 RAB44Q7Z6P3 723 aaPredicted RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 GLIS1Q8NBF1 620 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 OR52K1Q8NGK4 314 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 GPR152Q8TDT2 470 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 DPF3Q92784 378 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 ACDQ96AP0 544 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 RMDN1Q96DB5 314 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 FEM1CQ96JP0 617 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 B3GALT6Q96L58 329 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 TRIM55Q9BYV6 548 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 MPP6Q9NZW5 540 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 PDCD11Q14690 1871 aaKnown RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 CRYMQ14894 314 aa8.52□□□□□ -1.04
USP54-203ENST00000418501 RAB30Q15771 203 aa8.52□□□□□ -1.04
USP54-203ENST00000418501 MANEALQ5VSG8 457 aa8.52□□□□□ -1.04
USP54-203ENST00000418501 ZNF473Q8WTR7 871 aaKnown RBP8.52□□□□□ -1.04
USP54-203ENST00000418501 MAML1Q92585 1016 aa8.52□□□□□ -1.04
USP54-203ENST00000418501 PRMT1Q99873 361 aaKnown RBP8.52□□□□□ -1.04
USP54-203ENST00000418501 ZBP1Q9H171 429 aa8.52□□□□□ -1.04
USP54-203ENST00000418501 CCSER2Q9H7U1 834 aa8.52□□□□□ -1.04
USP54-203ENST00000418501 PRAMEF11O60813 436 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 IGSF6O95976 241 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 RPL17P18621 184 aaKnown RBP8.52□□□□□ -1.05
USP54-203ENST00000418501 HOXA9P31269 272 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 RABGGTBP53611 331 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 RHOAP61586 193 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 NAA20P61599 178 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 STXBP5Q5T5C0 1151 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 RASIP1Q5U651 963 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 CRLF3Q8IUI8 442 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 TTC16Q8NEE8 873 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 CKAP2Q8WWK9 683 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 CCDC126Q96EE4 140 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 RANBP9Q96S59 729 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 RAD18Q9NS91 495 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 THG1LQ9NWX6 298 aaKnown RBP8.52□□□□□ -1.05
USP54-203ENST00000418501 TBC1D30Q9Y2I9 924 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 TDRD15B5MCY1 1934 aaKnown RBP8.52□□□□□ -1.05
USP54-203ENST00000418501 CXorf51AA0A1B0GTR3 108 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 FAM159BA6NKW6 160 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 FAM72CH0Y354 149 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 KDELR3O43731 214 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 HNRNPCL1O60812 293 aaKnown RBP8.52□□□□□ -1.05
USP54-203ENST00000418501 PAPSS2O95340 614 aaPredicted RBP8.52□□□□□ -1.05
USP54-203ENST00000418501 IGLV3-27P01718 113 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 WNT3AP56704 352 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 AP1S1P61966 158 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 CDK18Q07002 472 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 FAM72AQ5TYM5 149 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 PIK3R6Q5UE93 754 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 FAM72DQ6L9T8 149 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 TIFABQ6ZNK6 161 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 FAM72BQ86X60 149 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 NUDCD3Q8IVD9 361 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 KIAA1958Q8N8K9 716 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 HMCESQ96FZ2 354 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 SIGLEC10Q96LC7 697 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 KLHL5Q96PQ7 755 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 DZANK1Q9NVP4 752 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 ARL2BPQ9Y2Y0 163 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 F8W810 466 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 BIRC5O15392 142 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 TEX28O15482 410 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 COCHO43405 550 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 TBL1XO60907 577 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 COL6A2P12110 1019 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 XPAP23025 273 aaPredicted RBP8.52□□□□□ -1.05
USP54-203ENST00000418501 GRK2P25098 689 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 USP46P62068 366 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 ANKRD20A4Q4UJ75 823 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 RAB6CQ53S08 254 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 MPP7Q5T2T1 576 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 BHLHA9Q7RTU4 235 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 BADQ92934 168 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 SCYL1Q96KG9 808 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 CORO1BQ9BR76 489 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 RAB6CQ9H0N0 254 aa8.52□□□□□ -1.05
USP54-203ENST00000418501 ZFP37Q9Y6Q3 630 aaPredicted RBP8.52□□□□□ -1.05
USP54-203ENST00000418501 E2F8A0AVK6 867 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms