RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 USP36Q9P275 1121 aaKnown RBP23.53■■□□□ 1.36
SMARCB1-205ENST00000417137 UBA2Q9UBT2 640 aaPredicted RBP23.53■■□□□ 1.36
SMARCB1-205ENST00000417137 CYP8B1Q9UNU6 501 aa23.53■■□□□ 1.36
SMARCB1-205ENST00000417137 FCF1Q9Y324 198 aaKnown RBP23.53■■□□□ 1.36
SMARCB1-205ENST00000417137 USP34Q70CQ2 3546 aa23.53■■□□□ 1.36
SMARCB1-205ENST00000417137 MUC22E2RYF6 1773 aaPredicted RBP23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 ZRANB2O95218 330 aaKnown RBP eCLIP23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 IL1BP01584 269 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 ZFXP17010 805 aaPredicted RBP23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 TPMTP51580 245 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 IL10RBQ08334 325 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 PAFAH1B3Q15102 231 aaKnown RBP23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 CST6Q15828 149 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 LEKR1Q6ZMV7 388 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 CACUL1Q86Y37 369 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 KATNAL2Q8IYT4 538 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 RCOR2Q8IZ40 523 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 OR2A12Q8NGT7 310 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 GANCQ8TET4 914 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 RNF25Q96BH1 459 aaPredicted RBP23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 ZC3H10Q96K80 434 aaKnown RBP23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 TNKS2Q9H2K2 1166 aa23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 IPO11Q9UI26 975 aaKnown RBP23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 SMG5Q9UPR3 1016 aaKnown RBP23.52■■□□□ 1.36
SMARCB1-205ENST00000417137 IGHV1OR15-9A0A0B4J2B8 117 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 C1QTNF3-AMACRE9PGA6 284 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 NDUFS2O75306 463 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 IGLV3-19P01714 112 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 C5AR1P21730 350 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 CD6P30203 668 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 CHRNA3P32297 505 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 SLC8A1P32418 973 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 SNRPD1P62314 119 aaKnown RBP23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 RFTN1Q14699 578 aaPredicted RBP23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 USP30Q70CQ3 517 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 LPCAT2Q7L5N7 544 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 KBTBD6Q86V97 674 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 SUMF1Q8NBK3 374 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 UBE2Q2Q8WVN8 375 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 PABPC3Q9H361 631 aaKnown RBP23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 TRIM10Q9UDY6 481 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 AMFRQ9UKV5 643 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 PPM1HQ9ULR3 514 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 MFHAS1Q9Y4C4 1052 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 ACTL7AQ9Y615 435 aa23.51■■□□□ 1.35
SMARCB1-205ENST00000417137 CCDC66A2RUB6 948 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 GRID2IPA4D2P6 1211 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 C3orf70A6NLC5 250 aaPredicted RBP23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 J3KR12 359 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 ZNF821O75541 412 aaPredicted RBP23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 TMCC1O94876 653 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 GSRP00390 522 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 PRNPP04156 253 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 PSMD8P48556 350 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 PLK5Q496M5 336 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 SPDYCQ5MJ68 293 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 TMCO4Q5TGY1 634 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 NCBP2-AS2Q69YL0 99 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 ZNF662Q6ZS27 426 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 PEX26Q7Z412 305 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 ATPAF2Q8N5M1 289 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 LRRC57Q8N9N7 239 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 TMIEQ8NEW7 156 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 NSMCE1Q8WV22 266 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 RBM41Q96IZ5 413 aaKnown RBP23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 LOXL4Q96JB6 756 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 ZNF599Q96NL3 588 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 OMDQ99983 421 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 HEPHQ9BQS7 1158 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 PDFQ9HBH1 243 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 IL36AQ9UHA7 158 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 GUCA1BQ9UMX6 200 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 PCDHA3Q9Y5H8 950 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 CKAP5Q14008 2032 aa23.5■■□□□ 1.35
SMARCB1-205ENST00000417137 ZFHX2Q9C0A1 2572 aaPredicted RBP23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 APOL1O14791 398 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 MID1O15344 667 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 PALMO75781 387 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 MX2P20592 715 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 CTNNA1P35221 906 aaKnown RBP23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 RHOAP61586 193 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 RAD51Q06609 339 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 CCDC15Q0P6D6 951 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 TFDP2Q14188 446 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 LAIR1Q6GTX8 287 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 DPY19L3Q6ZPD9 716 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 RFX6Q8HWS3 928 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 RYBPQ8N488 228 aaPredicted RBP23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 FAM160A2Q8N612 972 aaPredicted RBP23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 PQLC3Q8N755 202 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 NETO2Q8NC67 525 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 OR2AP1Q8NGE2 309 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 EXD1Q8NHP7 514 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 PIP4K2CQ8TBX8 421 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 PDLIM2Q96JY6 352 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 ZNF830Q96NB3 372 aaPredicted RBP23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 TM6SF2Q9BZW4 377 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 DUSP15Q9H1R2 295 aaPredicted RBP23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 FBXL12Q9NXK8 326 aa23.49■■□□□ 1.35
SMARCB1-205ENST00000417137 WSB2Q9NYS7 404 aaPredicted RBP23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms