RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 NDFIP2Q9NV92 336 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 RRN3Q9NYV6 651 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 IL36AQ9UHA7 158 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 TMEM59LQ9UK28 342 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 DMTF1Q9Y222 760 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 FCF1Q9Y324 198 aaKnown RBP11.83□□□□□ -0.52
USP4-204ENST00000416417 FARP1Q9Y4F1 1045 aaPredicted RBP11.83□□□□□ -0.52
USP4-204ENST00000416417 LOC400499M0QZD8 3231 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 COL5A1P20908 1838 aaPredicted RBP11.82□□□□□ -0.52
USP4-204ENST00000416417 IGLV3-10A0A075B6K4 115 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 F8VZ95 297 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 SIGLEC6O43699 453 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 ZMPSTE24O75844 475 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 F9P00740 461 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 ITPKBP27987 946 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 MAPK8IP2Q13387 824 aaPredicted RBP11.82□□□□□ -0.52
USP4-204ENST00000416417 FGL2Q14314 439 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 TCP11X2Q5H9J9 407 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 FBXL19Q6PCT2 694 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 ERN2Q76MJ5 926 aaKnown RBP11.82□□□□□ -0.52
USP4-204ENST00000416417 TMC6Q7Z403 805 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 SETD3Q86TU7 594 aaPredicted RBP11.82□□□□□ -0.52
USP4-204ENST00000416417 HORMAD1Q86X24 394 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 TMEM145Q8NBT3 493 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 NETO2Q8NC67 525 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 JOSD2Q8TAC2 188 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 SLC30A5Q8TAD4 765 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 EPS8L1Q8TE68 723 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 BBC3Q96PG8 261 aaPredicted RBP11.82□□□□□ -0.52
USP4-204ENST00000416417 TM6SF2Q9BZW4 377 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 ATP13A1Q9HD20 1204 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 DYRK4Q9NR20 520 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 CHMP5Q9NZZ3 219 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 ZNF212Q9UDV6 495 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 PCDHGA1Q9Y5H4 931 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 WASF2Q9Y6W5 498 aa11.82□□□□□ -0.52
USP4-204ENST00000416417 FAM72CH0Y354 149 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 EPHB6O15197 1021 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 RAD51BO15315 384 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 YKT6O15498 198 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 TLX3O43711 291 aaPredicted RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 CKMT2P17540 419 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 CHRNB2P17787 502 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 DGKAP23743 735 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 ARF5P84085 180 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 PROX2Q3B8N5 592 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 C6orf118Q5T5N4 469 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 FAM72AQ5TYM5 149 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 FAM72DQ6L9T8 149 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 GCNT7Q6ZNI0 430 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 IQCHQ86VS3 1027 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 FAM72BQ86X60 149 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 SLC22A18ASQ8N1D0 253 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 OXR1Q8N573 874 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 TMIEQ8NEW7 156 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 C1orf74Q96LT6 269 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 CCDC114Q96M63 670 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 C11orf70Q9BRQ4 267 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 NUP62CLQ9H1M0 184 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 GANQ9H2C0 597 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 ZDHHC6Q9H6R6 413 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 NLRC4Q9NPP4 1024 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 DKK4Q9UBT3 224 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 GGT7Q9UJ14 662 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 NOCTQ9UK39 431 aaKnown RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 AK5Q9Y6K8 562 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 ILVBLA1L0T0 632 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 CD160O95971 181 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 PRNPP04156 253 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 HNRNPA2B1P22626 353 aaKnown RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 ERCC5P28715 1186 aaPredicted RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 AKT2P31751 481 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 HNF1BP35680 557 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 SCNN1AP37088 669 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 RECQLP46063 649 aaPredicted RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 SERPINH1P50454 418 aaKnown RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 CCNHP51946 323 aaPredicted RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 POLR2FP61218 127 aaKnown RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 INSM1Q01101 510 aaPredicted RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 FMO1Q01740 532 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 GNA12Q03113 381 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 MTA1Q13330 715 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 CCDC14Q49A88 953 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 RWDD4Q6NW29 188 aaKnown RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 Q6ZSR6 202 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 PARS2Q7L3T8 475 aaKnown RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 BNIPLQ7Z465 357 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 RYBPQ8N488 228 aaPredicted RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 GPT2Q8TD30 523 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 RXFP2Q8WXD0 754 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 BMFQ96LC9 184 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 HAPLN3Q96S86 360 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 STK33Q9BYT3 514 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 ZYG11BQ9C0D3 744 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 FAM207AQ9NSI2 230 aaPredicted RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 DNAI1Q9UI46 699 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 TPX2Q9ULW0 747 aaKnown RBP11.81□□□□□ -0.52
USP4-204ENST00000416417 ITM2BQ9Y287 266 aa11.81□□□□□ -0.52
USP4-204ENST00000416417 APC2O95996 2303 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 GOLGA4Q13439 2230 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms