RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 HASPINQ8TF76 798 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 ATP2A3Q93084 1043 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 SLC7A6OSQ96CW6 309 aaPredicted RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 HDAC11Q96DB2 347 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 EPAS1Q99814 870 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 TMEM120AQ9BXJ8 343 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 C12orf65Q9H3J6 166 aaKnown RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 CSNK1G1Q9HCP0 422 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 DSEQ9UL01 958 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 MYO18AQ92614 2054 aaKnown RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 A0A0G2JND7 137 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 PSMD3O43242 534 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 CYP11A1P05108 521 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 POLBP06746 335 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 BPGMP07738 259 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 SPATA31D3P0C874 917 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 ERCC2P18074 760 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 MGAT1P26572 445 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 PSMB4P28070 264 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 HTR7P34969 479 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 COG7P83436 770 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 OCRLQ01968 901 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 TUSC3Q13454 348 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 BMPR2Q13873 1038 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 WASHC2DQ5SRD0 308 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 CASC4Q6P4E1 433 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 PACS1Q6VY07 963 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 CDHR3Q6ZTQ4 885 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 SPATA31D4Q6ZUB0 917 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 NUDCD3Q8IVD9 361 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP4-203ENST00000415188 CCNYQ8ND76 341 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 STKLD1Q8NE28 680 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 NDRG1Q92597 394 aaKnown RBP15.09■□□□□ 0.01
USP4-203ENST00000415188 PCED1BQ96HM7 432 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 ANKRD27Q96NW4 1050 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 EBF2Q9HAK2 575 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 KCNK13Q9HB14 408 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 PCMTD2Q9NV79 361 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 NOP53Q9NZM5 478 aaKnown RBP15.09■□□□□ 0.01
USP4-203ENST00000415188 HEY2Q9UBP5 337 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 LIMD1Q9UGP4 676 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 DCDC2Q9UHG0 476 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 HAO1Q9UJM8 370 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 DCTN4Q9UJW0 460 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 TRIM33Q9UPN9 1127 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 SSX2IPQ9Y2D8 614 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 STK38LQ9Y2H1 464 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 PLXNA3P51805 1871 aa15.09■□□□□ 0.01
USP4-203ENST00000415188 HMX2A2RU54 273 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 YJEFN3A6XGL0 299 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 HHLA1C9JL84 531 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 E7ENQ6 273 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 HGSO14964 777 aaPredicted RBP15.08■□□□□ 0.01
USP4-203ENST00000415188 UGT1A9O60656 530 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 CCDC22O60826 627 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 TADA2AO75478 443 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 RFPL2O75678 378 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 AP2A1O95782 977 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 GLUD1P00367 558 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 PDGFBP01127 241 aaPredicted RBP15.08■□□□□ 0.01
USP4-203ENST00000415188 RPL17P18621 184 aaKnown RBP15.08■□□□□ 0.01
USP4-203ENST00000415188 PTPN3P26045 913 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 HOXD11P31277 338 aaPredicted RBP15.08■□□□□ 0.01
USP4-203ENST00000415188 GRIA1P42261 906 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 CXCR3P49682 368 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 TMPRSS15P98073 1019 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 ZBTB16Q05516 673 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 GALNT2Q10471 571 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 OVGP1Q12889 678 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 TBCCQ15814 346 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 USP41Q3LFD5 358 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 TEX44Q53QW1 395 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 IER5LQ5T953 404 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 GRTP1Q5TC63 336 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 MROH9Q5TGP6 573 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 PRSS55Q6UWB4 352 aaPredicted RBP15.08■□□□□ 0.01
USP4-203ENST00000415188 CEP57Q86XR8 500 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 ARMC2Q8NEN0 867 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 ZMIZ2Q8NF64 920 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 AGAP11Q8TF27 550 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 LRRN4Q8WUT4 740 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 ISL2Q96A47 359 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 NSL1Q96IY1 281 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 UROC1Q96N76 676 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 CPNE1Q99829 537 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 ACBD6Q9BR61 282 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 WWP1Q9H0M0 922 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 FAM96AQ9H5X1 160 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 STN1Q9H668 368 aaKnown RBP15.08■□□□□ 0.01
USP4-203ENST00000415188 LRRC40Q9H9A6 602 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 UGT1A7Q9HAW7 530 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 UGT1A10Q9HAW8 530 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 UGT1A8Q9HAW9 530 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 SEPT10Q9P0V9 454 aa15.08■□□□□ 0.01
USP4-203ENST00000415188 KLHL8Q9P2G9 620 aaPredicted RBP15.08■□□□□ 0.01
USP4-203ENST00000415188 ZDBF2Q9HCK1 2354 aa15.08■□□□□ 0
USP4-203ENST00000415188 SYNJ2BP-COX16A0A087WUM0 186 aa15.08■□□□□ 0
USP4-203ENST00000415188 MAGEB16A2A368 324 aa15.08■□□□□ 0
USP4-203ENST00000415188 MYBPHLA2RUH7 354 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms