RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 N4BP2Q86UW6 1770 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-204ENST00000412568 MAP1BP46821 2468 aaKnown RBP11.35□□□□□ -0.59
PTPRF-204ENST00000412568 ADAMTS7Q9UKP4 1686 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 IGKV6D-21A0A0A0MT36 114 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 MAGEB16A2A368 324 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 TBL1XO60907 577 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 ZMPSTE24O75844 475 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 PAX7P23759 505 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 CNTFP26441 200 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 TLE2Q04725 743 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 FUT11Q495W5 492 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 TEX44Q53QW1 395 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 OTOAQ7RTW8 1153 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 GALNT4Q8N4A0 578 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 NAT16Q8N8M0 369 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 ST13P5Q8NFI4 369 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-204ENST00000412568 KCTD4Q8WVF5 259 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 MARK4Q96L34 752 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 ACBD6Q9BR61 282 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 MAF1Q9H063 256 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.35□□□□□ -0.592e-12■□□□□ 10.1
PTPRF-204ENST00000412568 FLRT1Q9NZU1 646 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 EFR3BQ9Y2G0 817 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 ITGA2BP08514 1039 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 KPNA1P52294 538 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-204ENST00000412568 LAMB3Q13751 1172 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 PPM1LQ5SGD2 360 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 GRTP1Q5TC63 336 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 PDPK2PQ6A1A2 396 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 HERC6Q8IVU3 1022 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 SCUBE1Q8IWY4 988 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 OR52K2Q8NGK3 314 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 SLC35F5Q8WV83 523 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 USP13Q92995 863 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-204ENST00000412568 OLFM3Q96PB7 478 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 CPNE1Q99829 537 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 BCO2Q9BYV7 579 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 ALG9Q9H6U8 611 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 SEPT3Q9UH03 358 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 PCDHB9Q9Y5E1 797 aa11.35□□□□□ -0.59
PTPRF-204ENST00000412568 DNAJC25-GNG10A0A024R161 153 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 KPNA3O00505 521 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 UGT1A9O60656 530 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 CCDC166P0CW27 439 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 ALADP13716 330 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 HOXA11P31270 313 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 CDK16Q00536 496 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 FAM187BQ17R55 369 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 FBXO48Q5FWF7 155 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 ITIH5Q86UX2 942 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 OR7D4Q8NG98 312 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 PEBP4Q96S96 227 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 HERPUD2Q9BSE4 406 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 DCLRE1BQ9H816 532 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 UGT1A7Q9HAW7 530 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 UGT1A10Q9HAW8 530 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 UGT1A8Q9HAW9 530 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 CFAP99D6REC4 459 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 LZTS3O60299 673 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 BEST1O76090 585 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 DDHD2O94830 711 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 UNC5CO95185 931 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 PIGNO95427 931 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 GRK2P25098 689 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 CDC25CP30307 473 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 L1CAMP32004 1257 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 PTPN9P43378 593 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 CHRNA4P43681 627 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 BOP1Q14137 746 aaKnown RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 GRAMD4Q6IC98 578 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 ZNF280BQ86YH2 543 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 SUGP1Q8IWZ8 645 aaKnown RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 AGAP11Q8TF27 550 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 TMEM209Q96SK2 561 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 THAP1Q9NVV9 213 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 RNF186Q9NXI6 227 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 PLA2G4CQ9UP65 541 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 A0A0U1RQF3 1178 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 H0YGN5 161 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 FGF10O15520 208 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 EDF1O60869 148 aaKnown RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 STBD1O95210 358 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 ZCCHC18P0CG32 403 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 CTNNB1P35222 781 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 AFF1P51825 1210 aaKnown RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 ZBTB17Q13105 803 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 PCID2Q5JVF3 399 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 ARHGAP17Q68EM7 881 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 CMASQ8NFW8 434 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 MS4A4AQ96JQ5 239 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 CYP2S1Q96SQ9 504 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 TBC1D10AQ9BXI6 508 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 BRD8Q9H0E9 1235 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 GKN1Q9NS71 199 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 PKD2L2Q9NZM6 624 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 PNMA8BQ9ULN7 279 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-204ENST00000412568 PCDHA11Q9Y5I1 949 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 NFS1Q9Y697 457 aa11.34□□□□□ -0.59
PTPRF-204ENST00000412568 ATP6AP2A0A1C7CYW4 349 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 ATP6AP2O75787 350 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms