RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 LRRC72A6NJI9 287 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 CREB3O43889 395 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 SH3BP5O60239 455 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 TOP3BO95985 862 aaKnown RBP19.45■□□□□ 0.7
SF3A1-202ENST00000411423 CEACAM1P13688 526 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 EPHB2P29323 1055 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 GKP32189 559 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 AFF3P51826 1226 aaKnown RBP19.45■□□□□ 0.7
SF3A1-202ENST00000411423 ARSIQ5FYB1 569 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 LRSAM1Q6UWE0 723 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 DSG4Q86SJ6 1040 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 RTL3Q8N8U3 475 aaKnown RBP19.45■□□□□ 0.7
SF3A1-202ENST00000411423 ZDHHC5Q9C0B5 715 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 MYO1AQ9UBC5 1043 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 ANKRD6Q9Y2G4 727 aa19.45■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3DA0A087WVF3 549 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3IA0A087WXS9 549 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3EA0A087X179 549 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3KA0A087X1G2 549 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 SPAARA0A1B0GVQ0 90 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 A0A1W2PR77 199 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 ANKRD62A6NC57 917 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3FA6NER0 549 aaPredicted RBP19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3LB9A6J9 549 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 C1QTNF3-AMACRE9PGA6 284 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 LATO43561 262 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 LEFTY1O75610 366 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3HP0C7X1 549 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TCF4P15884 667 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 GRIA4P48058 902 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 CCR5P51681 352 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 ZBED6P86452 979 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 SFSWAPQ12872 951 aaKnown RBP19.44■□□□□ 0.7
SF3A1-202ENST00000411423 FAM46CQ5VWP2 391 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3GQ6DHY5 549 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3CQ6IPX1 549 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 RETSATQ6NUM9 610 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 PPP1R2P3Q6NXS1 205 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TBC1D3Q8IZP1 549 aaPredicted RBP19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TMIEQ8NEW7 156 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 GRIN3AQ8TCU5 1115 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 SNRNP25Q9BV90 132 aaKnown RBP19.44■□□□□ 0.7
SF3A1-202ENST00000411423 TM6SF2Q9BZW4 377 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 MAGEH1Q9H213 219 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 PCSK1NQ9UHG2 260 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 WASF3Q9UPY6 502 aa19.44■□□□□ 0.7
SF3A1-202ENST00000411423 A0A087X0T9 212 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 WASH4PA8MWX3 477 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 KPNA3O00505 521 aaPredicted RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 SLC7A4O43246 635 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 RAMP2O60895 175 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 FAM228BP0C875 321 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 MIPP30301 263 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 MAT2AP31153 395 aaKnown RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 POLD3Q15054 466 aaPredicted RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 SKOR2Q2VWA4 1001 aaPredicted RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 TDRD12Q587J7 1177 aaKnown RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 PCDH20Q8N6Y1 951 aaKnown RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 OR6K2Q8NGY2 324 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 SYN2Q92777 582 aaPredicted RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 HMCESQ96FZ2 354 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 KCTD15Q96SI1 283 aaPredicted RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 CEP44Q9C0F1 390 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 RETREG1Q9H6L5 497 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 IL36AQ9UHA7 158 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 AP4E1Q9UPM8 1137 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 DOCK9Q9BZ29 2069 aa19.43■□□□□ 0.7
SF3A1-202ENST00000411423 TP53BP1Q12888 1972 aaPredicted RBP19.43■□□□□ 0.7
SF3A1-202ENST00000411423 H0Y8X5 98 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 KDELR3O43731 214 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 LRCH4O75427 683 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 SERPING1P05155 500 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 CASP14P31944 242 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 CTSKP43235 329 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 DNA2P51530 1060 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 CCNHP51946 323 aaPredicted RBP19.42■□□□□ 0.7
SF3A1-202ENST00000411423 AIF1P55008 147 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 RACK1P63244 317 aaKnown RBP19.42■□□□□ 0.7
SF3A1-202ENST00000411423 SLC20A2Q08357 652 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 CARD16Q5EG05 197 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 PRAMEF14Q5SWL7 426 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 FNIP1Q8TF40 1166 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 ARHGEF26Q96DR7 871 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 BTBD6Q96KE9 485 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 THAP2Q9H0W7 228 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 TM7SF3Q9NS93 570 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 NENFQ9UMX5 172 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 CA5BQ9Y2D0 317 aa19.42■□□□□ 0.7
SF3A1-202ENST00000411423 RASA4BC9J798 803 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 VILLO15195 856 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 RASA4O43374 803 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 CBFA2T3O75081 653 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 IL1R2P27930 398 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 SLC14A1Q13336 389 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 ATXN7L2Q5T6C5 722 aaPredicted RBP19.41■□□□□ 0.7
SF3A1-202ENST00000411423 NAXDQ8IW45 347 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 KLK6Q92876 244 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 CCDC114Q96M63 670 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 CNTNAP3BQ96NU0 1288 aa19.41■□□□□ 0.7
SF3A1-202ENST00000411423 EPAS1Q99814 870 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms