RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 ZNF235Q14590 738 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 ZNF77Q15935 545 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 LONRF1Q17RB8 773 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 CCDC38Q502W7 563 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 MPPE1Q53F39 396 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 DNAJC21Q5F1R6 531 aaKnown RBP12.68□□□□□ -0.38
CHMP3-204ENST00000409727 CASC4Q6P4E1 433 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 PGBD5Q8N414 524 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 CPXM2Q8N436 756 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 DNAAF3Q8N9W5 541 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 TTC25Q96NG3 672 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 RETREG1Q9H6L5 497 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 PDFQ9HBH1 243 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 XAB2Q9HCS7 855 aaKnown RBP12.68□□□□□ -0.38
CHMP3-204ENST00000409727 DZANK1Q9NVP4 752 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 VPS28Q9UK41 221 aa12.68□□□□□ -0.38
CHMP3-204ENST00000409727 TRANK1O15050 2925 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 C2orf16Q68DN1 1984 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 NEDD8-MDP1E9PL57 170 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 POLR3GO15318 223 aaPredicted RBP12.67□□□□□ -0.38
CHMP3-204ENST00000409727 KDELR3O43731 214 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 RNF40O75150 1001 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 AGTP01019 485 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 MYZAPP0CAP1 466 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 MGAT1P26572 445 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 VIPR2P41587 438 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 EIF3BP55884 814 aaKnown RBP12.67□□□□□ -0.38
CHMP3-204ENST00000409727 GPX6P59796 221 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 CDK16Q00536 496 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 TMCO4Q5TGY1 634 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 KCTD11Q693B1 232 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 LRRC8BQ6P9F7 803 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 C3orf62Q6ZUJ4 267 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 TMEM25Q86YD3 366 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 RNF135Q8IUD6 432 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 CCDC117Q8IWD4 279 aaPredicted RBP12.67□□□□□ -0.38
CHMP3-204ENST00000409727 ATP11CQ8NB49 1132 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 MRRFQ96E11 262 aaKnown RBP12.67□□□□□ -0.38
CHMP3-204ENST00000409727 FCRL5Q96RD9 977 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 SH3GL2Q99962 352 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 FEM1AQ9BSK4 669 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 FRMD8Q9BZ67 464 aaPredicted RBP12.67□□□□□ -0.38
CHMP3-204ENST00000409727 MED4Q9NPJ6 270 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 UBA2Q9UBT2 640 aaPredicted RBP12.67□□□□□ -0.38
CHMP3-204ENST00000409727 ZC3H7BQ9UGR2 993 aaKnown RBP12.67□□□□□ -0.38
CHMP3-204ENST00000409727 TEX264Q9Y6I9 313 aa12.67□□□□□ -0.38
CHMP3-204ENST00000409727 A0A087WUV0 522 aaPredicted RBP12.66□□□□□ -0.38
CHMP3-204ENST00000409727 GOLGA6CA6NDK9 693 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 MUSKO15146 869 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 GOLGA6DP0CG33 693 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 TPH1P17752 444 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 CD86P42081 329 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 ARF5P84085 180 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 TTMPQ5BVD1 217 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 NPAS3Q8IXF0 933 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 APCDD1Q8J025 514 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 EFHBQ8N7U6 833 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 FGF13Q92913 245 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 EXOC2Q96KP1 924 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 LRRC3BQ96PB8 259 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 FICDQ9BVA6 458 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 CINPQ9BW66 212 aaPredicted RBP12.66□□□□□ -0.38
CHMP3-204ENST00000409727 FSD1LQ9BXM9 530 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 PHACTR1Q9C0D0 580 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 LRRC40Q9H9A6 602 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 GOLGA6AQ9NYA3 693 aa12.66□□□□□ -0.38
CHMP3-204ENST00000409727 AAR2Q9Y312 384 aaKnown RBP12.66□□□□□ -0.38
CHMP3-204ENST00000409727 RASGRF2O14827 1237 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 CACNG3O60359 315 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 ANXA9O76027 345 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 CD70P32970 193 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 MAGEA3P43357 314 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 NIPAL4Q0D2K0 466 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 USP4Q13107 963 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 EFTUD2Q15029 972 aaKnown RBP eCLIP12.65□□□□□ -0.38
CHMP3-204ENST00000409727 SMAD1Q15797 465 aaKnown RBP12.65□□□□□ -0.38
CHMP3-204ENST00000409727 FAM78AQ5JUQ0 283 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 FYB2Q5VWT5 728 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 ANKRD54Q6NXT1 300 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 SYCE2Q6PIF2 218 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 GPR149Q86SP6 731 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 SH2D3CQ8N5H7 860 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 TEX26Q8N6G2 289 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 CELF5Q8N6W0 485 aaKnown RBP12.65□□□□□ -0.38
CHMP3-204ENST00000409727 FATE1Q969F0 183 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 RSPRY1Q96DX4 576 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 SIGLEC10Q96LC7 697 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 BBS2Q9BXC9 721 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 ACE2Q9BYF1 805 aaPredicted RBP12.65□□□□□ -0.38
CHMP3-204ENST00000409727 SYBUQ9NX95 663 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 VPS18Q9P253 973 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 CTNNAL1Q9UBT7 734 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 TNRC18O15417 2968 aaPredicted RBP12.65□□□□□ -0.38
CHMP3-204ENST00000409727 EXOC1LA0A1B0GW35 172 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 SDR42E2A6NKP2 422 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 SOBPA7XYQ1 873 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 ERI2A8K979 691 aaKnown RBP12.65□□□□□ -0.38
CHMP3-204ENST00000409727 POC1B-GALNT4F8VUJ3 575 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 SUN1O94901 812 aa12.65□□□□□ -0.38
CHMP3-204ENST00000409727 PHBP35232 272 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms