RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CITO14578 2027 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 A0A0A0MRY4 1105 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 C2CD4BA6NLJ0 364 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 PMM2O15305 246 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 MFSD11O43934 449 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 PPARGP37231 505 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 FDFT1P37268 417 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 CCDC142Q17RM4 750 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 SLC9B1Q4ZJI4 515 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 ZCCHC7Q8N3Z6 543 aaKnown RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 URGCPQ8TCY9 931 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 SPATA13Q96N96 652 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 OR52B2Q96RD2 323 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 GPATCH1Q9BRR8 931 aaKnown RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 BHMG1C9JSJ3 638 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 KPNA4O00629 521 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 CILPO75339 1184 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 HSPA8P11142 646 aaKnown RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 IDH3AP50213 366 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 TKTL1P51854 596 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 IST1P53990 364 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 TBCCQ15814 346 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 ZBTB49Q6ZSB9 765 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 RPS27LQ71UM5 84 aaKnown RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 FASTKD5Q7L8L6 764 aaKnown RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 PIGZQ86VD9 579 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 CHSY1Q86X52 802 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 ANKRD13AQ8IZ07 590 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 TSPAN18Q96SJ8 248 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 ACE2Q9BYF1 805 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 LIN28AQ9H9Z2 209 aaKnown RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 COPG2Q9UBF2 871 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 ACOT9Q9Y305 439 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 CCL22O00626 93 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 BAIAP3O94812 1187 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 MT-ND1P03886 318 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 UQCRBP14927 111 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 CAND1Q86VP6 1230 aaKnown RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 MYO1HQ8N1T3 1032 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 DNERQ8NFT8 737 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 OSCP1Q8WVF1 389 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 SDCCAG3Q96C92 435 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 PTCD3Q96EY7 689 aaKnown RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 COX4I2Q96KJ9 171 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 TNIP3Q96KP6 325 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 C7orf26Q96N11 449 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 C20orf27Q9GZN8 174 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 MARCH7Q9H992 704 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 TUBGCP4Q9UGJ1 667 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 NOD1Q9Y239 953 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 ADGRA2Q96PE1 1338 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 LAMB1P07942 1786 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 NEMP2A6NFY4 417 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 CCRL2O00421 344 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 RFPL1O75677 317 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 TGDSO95455 350 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 ME2P23368 584 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 CRHR1P34998 444 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 NDUFV1P49821 464 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 OAZ1P54368 228 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 CDH13P55290 713 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 TCEAL1Q15170 157 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 LDLRAP1Q5SW96 308 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 TP53INP2Q8IXH6 220 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 CORO1BQ9BR76 489 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 SLC4A5Q9BY07 1137 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 COL5A3P25940 1745 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 ZNF839A8K0R7 811 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 MAGEC1O60732 1142 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 PGAM1P18669 254 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 PIK3R1P27986 724 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 GABRB2P47870 512 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 ZNF280AP59817 542 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 HPCAP84074 193 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 OTUD3Q5T2D3 398 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-206ENST00000405805 C15orf39Q6ZRI6 1047 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 SCAIQ8N9R8 606 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 FICDQ9BVA6 458 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 WDCPQ9H6R7 721 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 KCNK13Q9HB14 408 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 WDR70Q9NW82 654 aa12.11□□□□□ -0.47
HMGB1-206ENST00000405805 H3BRB1 525 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 NR5A2O00482 541 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 TNFAIP8O95379 198 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 LMO2P25791 158 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 KPNA1P52294 538 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 SMU1Q2TAY7 513 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ARL13AQ5H913 290 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ZNF470Q6ECI4 717 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 GK5Q6ZS86 529 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 PQLC1Q8N2U9 271 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 GATA5Q9BWX5 397 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 PCDHAC1Q9H158 963 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 TUT1Q9H6E5 874 aaKnown RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 CYP3A43Q9HB55 503 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 DTLQ9NZJ0 730 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 EGFL7Q9UHF1 273 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 TMEM233B4DJY2 109 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 USP2O75604 605 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ARIH2O95376 493 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms