RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CDK20Q8IZL9 346 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 PHACTR1Q9C0D0 580 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 SNRPB2P08579 225 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 NRF1Q16656 503 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 PFKFB4Q16877 469 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 IL27RAQ6UWB1 636 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ZNF621Q6ZSS3 439 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 NKAPQ8N5F7 415 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 SEMA6AQ9H2E6 1030 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 MARCH2Q9P0N8 246 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 INVSQ9Y283 1065 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 RNF225M0QZC1 329 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 EDF1O60869 148 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 LGALS2P05162 132 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 SPATA31C1P0DKV0 1188 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 COX4I1P13073 169 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 HPGDP15428 266 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 NPR3P17342 541 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 FMO4P31512 558 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 TUFMP49411 452 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 CLCN5P51795 746 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 TRMT11Q7Z4G4 463 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 STARD8Q92502 1023 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 SMAD5Q99717 465 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 STN1Q9H668 368 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ALG9Q9H6U8 611 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 STARD7Q9NQZ5 370 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ARHGAP28Q9P2N2 729 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 FAM198AQ9UFP1 575 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ZMYM5Q9UJ78 669 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 TMEM88BA6NKF7 163 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 PDHXO00330 501 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ABCB1P08183 1280 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ITGB5P18084 799 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ATP4AP20648 1035 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ADORA2AP29274 412 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 RTP1P59025 263 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 BCL2L1Q07817 233 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 MFSD10Q14728 455 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 DGUOKQ16854 277 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 FAM187BQ17R55 369 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 TRIM71Q2Q1W2 868 aaKnown RBP11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ARMC12Q5T9G4 340 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 TTC7BQ86TV6 843 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 OR5B17Q8NGF7 314 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 WDR36Q8NI36 951 aaKnown RBP11.57□□□□□ -0.56
PTPRF-203ENST00000372407 PTCD3Q96EY7 689 aaKnown RBP11.57□□□□□ -0.56
PTPRF-203ENST00000372407 GRIP2Q9C0E4 1043 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 CDT1Q9H211 546 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 RIBC2Q9H4K1 309 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 HMG20AQ9NP66 347 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 SETD1AO15047 1707 aaKnown RBP11.57□□□□□ -0.56
PTPRF-203ENST00000372407 H3BN98 237 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 BIRC5O15392 142 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ZBTB14O43829 449 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 KRT36O76013 467 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 CHN2P52757 468 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 HK2P52789 917 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 PSME3P61289 254 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 KHDRBS2Q5VWX1 349 aaKnown RBP11.57□□□□□ -0.56
PTPRF-203ENST00000372407 IQSEC1Q6DN90 963 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 FAM183BPQ6ZVS7 135 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ANKRD52Q8NB46 1076 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 FNIP1Q8TF40 1166 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 MED8Q96G25 268 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 TEKT5Q96M29 485 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 DEPDC7Q96QD5 511 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 TBCDQ9BTW9 1192 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 FAM126AQ9BYI3 521 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-203ENST00000372407 VPS45Q9NRW7 570 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 PRDM4Q9UKN5 801 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 RAP2CQ9Y3L5 183 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 SNX8Q9Y5X2 465 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 H3BMM5 538 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 NFICP08651 508 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 WEE1P30291 646 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 GRIA3P42263 894 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 FUT2Q10981 343 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 TIMM50Q3ZCQ8 353 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 B3GNT6Q6ZMB0 384 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 MTSS1LQ765P7 747 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ARHGAP22Q7Z5H3 698 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 TLK2Q86UE8 772 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 LRRC49Q8IUZ0 686 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 TMEM139Q8IV31 216 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 C12orf56Q8IXR9 622 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 PWWP2AQ96N64 755 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 C6orf62Q9GZU0 229 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-203ENST00000372407 RNPEPQ9H4A4 650 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 REEP1Q9H902 201 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 CATSPERZQ9NTU4 200 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 ARL15Q9NXU5 204 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 NUDT5Q9UKK9 219 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 PCDHA11Q9Y5I1 949 aa11.57□□□□□ -0.56
PTPRF-203ENST00000372407 NFKBIEO00221 500 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 IGSF6O95976 241 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 TFEBP19484 476 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 NFKB1P19838 968 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 GSSP48637 474 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PSEN2P49810 448 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms