RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TCP10LQ8TDR4 215 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 CXorf40BQ96DE9 158 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 FTHL17Q9BXU8 183 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 BCL2L14Q9BZR8 327 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 ATP13A3Q9H7F0 1226 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 HMX1Q9NP08 348 aaPredicted RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 ING3Q9NXR8 418 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 ZMYM5Q9UJ78 669 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 RAB23Q9ULC3 237 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 LACTBL1A8MY62 500 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 KRT33AO76009 404 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 LDOC1O95751 146 aaPredicted RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 CD44P16070 742 aaKnown RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 PPIBP23284 216 aaKnown RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 RPL9P32969 192 aaKnown RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 RPA3P35244 121 aaPredicted RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 CHKAP35790 457 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 CACNA2D1P54289 1103 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 ACTR3P61158 418 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 BNIP2Q12982 314 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 TOMM20Q15388 145 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 TMEM119Q4V9L6 283 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 ELMO1Q92556 727 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 APBA2Q99767 749 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 TKTL2Q9H0I9 626 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 EXO5Q9H790 373 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 OSGEPQ9NPF4 335 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 NINJ2Q9NZG7 142 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 NRXN1Q9ULB1 1477 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 AVILO75366 819 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 AMPD1P23109 780 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 ATN1P54259 1190 aaPredicted RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 PPATQ06203 517 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 FSCN1Q16658 493 aaKnown RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 ZSWIM7Q19AV6 140 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 ANXA8L1Q5VT79 327 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 TTC23Q5W5X9 447 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 LRRC74BQ6ZQY2 392 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 CCDC33Q8N5R6 958 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 FLCNQ8NFG4 579 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 SLC2A14Q8TDB8 520 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 AP3S1Q92572 193 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 ZNF558Q96NG5 402 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 CLCC1Q96S66 551 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.55□□□□□ -1.36
UPF2-201ENST00000356352 CD248Q9HCU0 757 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 MORF4L1Q9UBU8 362 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 LEF1Q9UJU2 399 aaPredicted RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 CDH9Q9ULB4 789 aa6.55□□□□□ -1.36
UPF2-201ENST00000356352 MTF2Q9Y483 593 aaPredicted RBP6.55□□□□□ -1.36
UPF2-201ENST00000356352 PQBP1O60828 265 aaKnown RBP6.54□□□□□ -1.36
UPF2-201ENST00000356352 UBOX5O94941 541 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 IFNA16P05015 189 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 TPH1P17752 444 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 ALOX12P18054 663 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 HTR1BP28222 390 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 CRATP43155 626 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 IRF8Q02556 426 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 ST3GAL1Q11201 340 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 TRIM32Q13049 653 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 LSM12Q3MHD2 195 aaKnown RBP6.54□□□□□ -1.36
UPF2-201ENST00000356352 HECTD3Q5T447 861 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 LRRC38Q5VT99 294 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 TMEM199Q8N511 208 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 CCDC185Q8N715 623 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 HJURPQ8NCD3 748 aaPredicted RBP6.54□□□□□ -1.36
UPF2-201ENST00000356352 KBTBD8Q8NFY9 601 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 SELENOMQ8WWX9 145 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 CD101Q93033 1021 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 WNT8BQ93098 351 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 FUT8Q9BYC5 575 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 PIF1Q9H611 641 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 ETNK2Q9NVF9 386 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 GPN3Q9UHW5 284 aaPredicted RBP6.54□□□□□ -1.36
UPF2-201ENST00000356352 GAKO14976 1311 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 MYO3AQ8NEV4 1616 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 MFN2O95140 757 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 PRG2P13727 222 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 LRPAP1P30533 357 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 BCAP31P51572 246 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 C21orf59P57076 290 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 MTAPQ13126 283 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 ACVR2BQ13705 512 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 LY6KQ17RY6 165 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 OTUD3Q5T2D3 398 aaPredicted RBP6.54□□□□□ -1.36
UPF2-201ENST00000356352 TTC27Q6P3X3 843 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 SMYD1Q8NB12 490 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 FNIP1Q8TF40 1166 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 NMD3Q96D46 503 aaKnown RBP6.54□□□□□ -1.36
UPF2-201ENST00000356352 PGM2Q96G03 612 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 MLPHQ9BV36 600 aaPredicted RBP6.54□□□□□ -1.36
UPF2-201ENST00000356352 MARCH2Q9P0N8 246 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 SUCOQ9UBS9 1254 aaKnown RBP6.54□□□□□ -1.36
UPF2-201ENST00000356352 ITGB1BP2Q9UKP3 347 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 SLC9A8Q9Y2E8 581 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 NR2E3Q9Y5X4 410 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 A0A0A0MRY4 1105 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 GSAPA4D1B5 854 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 CSH1P0DML2 217 aa6.54□□□□□ -1.36
UPF2-201ENST00000356352 CSH2P0DML3 217 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms