RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 UBA2Q9UBT2 640 aaPredicted RBP9.38□□□□□ -0.91
USP4-202ENST00000351842 CABIN1Q9Y6J0 2220 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 MUSKO15146 869 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 ATP9BO43861 1147 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 MAFKO60675 156 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 STK10O94804 968 aaKnown RBP9.38□□□□□ -0.91
USP4-202ENST00000351842 HLA-DQB2P05538 268 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 CHRNA3P32297 505 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 RPL22P35268 128 aaKnown RBP9.38□□□□□ -0.91
USP4-202ENST00000351842 CLCN6P51797 869 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 AIF1P55008 147 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TUBB2AQ13885 445 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TERF2Q15554 542 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 CES3Q6UWW8 571 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 MAATS1Q7Z4T9 603 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 CDKL3Q8IVW4 592 aaPredicted RBP9.38□□□□□ -0.91
USP4-202ENST00000351842 ZNF683Q8IZ20 524 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 PNPLA1Q8N8W4 532 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 SUSD6Q92537 303 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 FERMT1Q9BQL6 677 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TUBB2BQ9BVA1 445 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 IL1RAPL1Q9NZN1 696 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 MAD1L1Q9Y6D9 718 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 DENND4CQ5VZ89 1909 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 SMIM23A6NLE4 172 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 TMCC1O94876 653 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 KAT7O95251 611 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 PIGNO95427 931 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 EPHX1P07099 455 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 MMP13P45452 471 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 RPL21P46778 160 aaKnown RBP9.37□□□□□ -0.91
USP4-202ENST00000351842 GALK1P51570 392 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ARF5P84085 180 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 CALCOCO2Q13137 446 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 SEPT6Q14141 434 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 GALNT3Q14435 633 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 DLG2Q15700 870 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ANKRD20A2Q5SQ80 823 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 CFAP58Q5T655 872 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ANKRD20A1Q5TYW2 823 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ANKRD20A3Q5VUR7 823 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ANKRD22Q5VYY1 191 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 IZUMO3Q5VZ72 239 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 FAM124AQ86V42 546 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ANKMY2Q8IV38 441 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 PGBD3Q8N328 593 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 MAIP1Q8WWC4 291 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 C2orf49Q9BVC5 232 aaPredicted RBP9.37□□□□□ -0.91
USP4-202ENST00000351842 FSD1LQ9BXM9 530 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 CD320Q9NPF0 282 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 KIAA1522Q9P206 1035 aaPredicted RBP9.37□□□□□ -0.91
USP4-202ENST00000351842 SHOC2Q9UQ13 582 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 CCL22O00626 93 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 INSIG1O15503 277 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 MYBL2P10244 700 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 PTPN3P26045 913 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ST8SIA6P61647 398 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 VSNL1P62760 191 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 SERINC3Q13530 473 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 SMAD2Q15796 467 aaKnown RBP9.37□□□□□ -0.91
USP4-202ENST00000351842 BBS9Q3SYG4 887 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 GRAMD4Q6IC98 578 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 MTSS1LQ765P7 747 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 PSTKQ8IV42 348 aaKnown RBP9.37□□□□□ -0.91
USP4-202ENST00000351842 SIX5Q8N196 739 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 CNTD1Q8N815 330 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 SLC35B2Q8TB61 432 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 RMDN1Q96DB5 314 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ETNK1Q9HBU6 452 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ABCA7Q8IZY2 2146 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 KPNA3O00505 521 aaPredicted RBP9.37□□□□□ -0.91
USP4-202ENST00000351842 CTPS1P17812 591 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ITIH2P19823 946 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 TUBB4BP68371 445 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 LBRQ14739 615 aaKnown RBP9.37□□□□□ -0.91
USP4-202ENST00000351842 EGFLAMQ63HQ2 1017 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 Q6ZS52 159 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 RTL10Q7L3V2 364 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 CAMK1DQ8IU85 385 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 FBXO25Q8TCJ0 367 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 LRRC19Q9H756 370 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 CHKBQ9Y259 395 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 ZNF510Q9Y2H8 683 aa9.37□□□□□ -0.91
USP4-202ENST00000351842 KIF26AQ9ULI4 1882 aaPredicted RBP9.36□□□□□ -0.91
USP4-202ENST00000351842 GOLGA6CA6NDK9 693 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 GOLGA6BA6NDN3 693 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 DRGXA6NNA5 263 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 CCDC188H7C350 402 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 IL1BP01584 269 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 UGT2B4P06133 528 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 GOLGA6DP0CG33 693 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 NNMTP40261 264 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 RECQLP46063 649 aaPredicted RBP9.36□□□□□ -0.91
USP4-202ENST00000351842 ITGA8P53708 1063 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 EPHB1P54762 984 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 TMPRSS15P98073 1019 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 ECT2LQ008S8 904 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 WASHC5Q12768 1159 aa9.36□□□□□ -0.91
USP4-202ENST00000351842 PAFAH1B3Q15102 231 aaKnown RBP9.36□□□□□ -0.91
USP4-202ENST00000351842 OASLQ15646 514 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms