RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 DENND2CQ68D51 928 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 IL31Q6EBC2 164 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 CES5AQ6NT32 575 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 KIAA0907Q7Z7F0 614 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 METTL3Q86U44 580 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 CCDC117Q8IWD4 279 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 ADGRG2Q8IZP9 1017 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 BBS5Q8N3I7 341 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 CARNMT1Q8N4J0 409 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 TAB3Q8N5C8 712 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 PDCD7Q8N8D1 485 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 ARRDC2Q8TBH0 407 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 WFDC5Q8TCV5 224 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 OSCP1Q8WVF1 389 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 PABPC5Q96DU9 382 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 RSPRY1Q96DX4 576 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 RIPOR3Q96MK2 946 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 LRRC3BQ96PB8 259 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 ZIM3Q96PE6 472 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 C2orf49Q9BVC5 232 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 CASS4Q9NQ75 786 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 UBA2Q9UBT2 640 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 GOLGA8MH3BSY2 632 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 CD160O95971 181 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 GSTA2P09210 222 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 CR2P20023 1033 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 CES1P23141 567 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 MZF1P28698 734 aaPredicted RBP15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 ADRA1AP35348 466 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 CSKP41240 450 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 MTHFRP42898 656 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 LMAN2Q12907 356 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 MPP3Q13368 585 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 ADGRE1Q14246 886 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 DMC1Q14565 340 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 FASTKD3Q14CZ7 662 aaKnown RBP15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 RALGPS1Q5JS13 557 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 NAPEPLDQ6IQ20 393 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 KDELC1Q6UW63 502 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 OTOP3Q7RTS5 596 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 CROCCP2Q86T23 111 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 LINC00523Q86TU6 105 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 TMEM25Q86YD3 366 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 AGGF1Q8N302 714 aaeCLIP15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 ATP11CQ8NB49 1132 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 BPIFB1Q8TDL5 484 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 USP33Q8TEY7 942 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 UBLCP1Q8WVY7 318 aaPredicted RBP15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 SIGLEC10Q96LC7 697 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 NAT9Q9BTE0 207 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 POLR1EQ9GZS1 481 aaKnown RBP15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 MUC3BQ9H195 1237 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 MED4Q9NPJ6 270 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 FBXO10Q9UK96 956 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 PLAAQ9Y263 795 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 NUP205Q92621 2012 aa15.17■□□□□ 0.02
CCDC88C-202ENST00000334448 C2orf16Q68DN1 1984 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 KIF26AQ9ULI4 1882 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 MMP2P08253 660 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 LTBRP36941 435 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 LMAN1P49257 510 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 VASPP50552 380 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 SLC20A2Q08357 652 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 FCHO2Q0JRZ9 810 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 SLC29A2Q14542 456 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 ZNF235Q14590 738 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 GRIN2CQ14957 1233 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 PDGFRLQ15198 375 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 KYNUQ16719 465 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 EML3Q32P44 896 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 PLEKHG6Q3KR16 790 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 BBS9Q3SYG4 887 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 RETSATQ6NUM9 610 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 GET4Q7L5D6 327 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 PRPF39Q86UA1 669 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 CCNJLQ8IV13 435 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 ZBED8Q8IZ13 594 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 PGBD5Q8N414 524 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 NECTIN4Q96NY8 510 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 SPON2Q9BUD6 331 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 PPCSQ9HAB8 311 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 ARNT2Q9HBZ2 717 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 LRRC4CQ9HCJ2 640 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 NT5MQ9NPB1 228 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 DNAJC17Q9NVM6 304 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 FETUBQ9UGM5 382 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 VPS51Q9UID3 782 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 VPS28Q9UK41 221 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 WNT6Q9Y6F9 365 aa15.16■□□□□ 0.02
CCDC88C-202ENST00000334448 MUSKO15146 869 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 NEBLO76041 1014 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 ADH1CP00326 375 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 EPOP01588 193 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 CYP17A1P05093 508 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 GLDCP23378 1020 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 ZNF844Q08AG5 666 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 NSUN2Q08J23 767 aaKnown RBP eCLIP15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 NIPAL4Q0D2K0 466 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 GPS2Q13227 327 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 FRG1Q14331 258 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms