RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 KATNAL2Q8IYT4 538 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 SYCE1Q8N0S2 351 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 ATPAF2Q8N5M1 289 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 PCDH20Q8N6Y1 951 aaKnown RBP16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 OR2A12Q8NGT7 310 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 RNF157Q96PX1 679 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 MAK16Q9BXY0 300 aaKnown RBP16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 TM6SF2Q9BZW4 377 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 PDFQ9HBH1 243 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 MYO15AQ9UKN7 3530 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 ZNF487B1APH4 448 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 MID1O15344 667 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 MAP3K13O43283 966 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 IL1BP01584 269 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 BCKDHBP21953 392 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 CTNNA1P35221 906 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 TPMTP51580 245 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 ZBTB16Q05516 673 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 PAFAH1B3Q15102 231 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 TTC31Q49AM3 519 aaPredicted RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 METTL3Q86U44 580 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 KBTBD6Q86V97 674 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 VSIG1Q86XK7 387 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 RFX6Q8HWS3 928 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 CCDC50Q8IVM0 306 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 RYBPQ8N488 228 aaPredicted RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 RNF10Q8N5U6 811 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 CHST14Q8NCH0 376 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 CASKIN2Q8WXE0 1202 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 NKD2Q969F2 451 aaPredicted RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 ISG20Q96AZ6 181 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 ZNF830Q96NB3 372 aaPredicted RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 SEMA4AQ9H3S1 761 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 LZTFL1Q9NQ48 299 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 ITM2CQ9NQX7 267 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 USP36Q9P275 1121 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 IPO11Q9UI26 975 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 MBD1Q9UIS9 605 aaPredicted RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 AMFRQ9UKV5 643 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 RAB23Q9ULC3 237 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 SMG5Q9UPR3 1016 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 CAPN6Q9Y6Q1 641 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 NUP205Q92621 2012 aa16.18■□□□□ 0.18
CCDC28A-201ENST00000332797 IGHV1OR15-9A0A0B4J2B8 117 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 MCF2LO15068 1137 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 ALOX15BO15296 676 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 MAP3K6O95382 1288 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 FTCDO95954 541 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 ADH1BP00325 375 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 CTNNA2P26232 953 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 RHOAP61586 193 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 DYNLT1P63172 113 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 IL10RBQ08334 325 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 INO80DQ53TQ3 878 aaPredicted RBP16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 CARD16Q5EG05 197 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 SPOCD1Q6ZMY3 1216 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 DPY19L3Q6ZPD9 716 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 PEX26Q7Z412 305 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 NT5DC3Q86UY8 548 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 FAM124AQ86V42 546 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 C11orf74Q86VG3 221 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 GRIN3AQ8TCU5 1115 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 GANCQ8TET4 914 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 RBM41Q96IZ5 413 aaKnown RBP16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 PABPC3Q9H361 631 aaKnown RBP16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 KCNF1Q9H3M0 494 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 PPP2R2CQ9Y2T4 447 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 PCDHA3Q9Y5H8 950 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 PLXND1Q9Y4D7 1925 aa16.17■□□□□ 0.18
CCDC28A-201ENST00000332797 CCDC66A2RUB6 948 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 PROB1E7EW31 1015 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 C1QTNF3-AMACRE9PGA6 284 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 APOL1O14791 398 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 ZRANB2O95218 330 aaKnown RBP eCLIP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 GSRP00390 522 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 LMNAP02545 664 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 CTSLP07711 333 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 CHRNA3P32297 505 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 SLC8A1P32418 973 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 CDKN2BP42772 138 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 CCNHP51946 323 aaPredicted RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 GBE1Q04446 702 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 LLGL1Q15334 1064 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 POM121L1PQ3SYA9 428 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 PLK5Q496M5 336 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 ATXN7L2Q5T6C5 722 aaPredicted RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 KAZNQ674X7 775 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 SLC9A4Q6AI14 798 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 RCOR2Q8IZ40 523 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 PLD5Q8N7P1 536 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 OR6K2Q8NGY2 324 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 EXD1Q8NHP7 514 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 PIP4K2CQ8TBX8 421 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 ZDHHC6Q9H6R6 413 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 IL36AQ9UHA7 158 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 SARDHQ9UL12 918 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 SCML1Q9UN30 329 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 RNASEH2AO75792 299 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 IGSF6O95976 241 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms