RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PTX3P26022 381 aaPredicted RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 LCN1P1Q5VSP4 162 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 PHACTR4Q8IZ21 702 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 PIH1D2Q8WWB5 315 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 SAMD4AQ9UPU9 718 aaKnown RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ABCC3O15438 1527 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 A0A096LPK6 155 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 C19orf81C9J6K1 198 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 MAGEC1O60732 1142 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 NPTXRO95502 500 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 BAG6P46379 1132 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 RGS7P49802 495 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 UGT2B15P54855 530 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 TRIM40Q6P9F5 258 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 SEMA4AQ9H3S1 761 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 SP140LQ9H930 580 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 MYBP10242 640 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ELP6Q0PNE2 266 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 DDI2Q5TDH0 399 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 TTI2Q6NXR4 508 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 SMAD5Q99717 465 aaKnown RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 AIFM2Q9BRQ8 373 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ANKHQ9HCJ1 492 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 PLCL2Q9UPR0 1127 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 KCNH4Q9UQ05 1017 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 KIF1AQ12756 1690 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 FAM240BA0A1B0GVZ2 78 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 CDK9P50750 372 aaKnown RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ALDH3A2P51648 485 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 TCEA2Q15560 299 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 PTPRNQ16849 979 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 C11orf96Q7Z7L8 435 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 WDR49Q8IV35 697 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 RFKQ969G6 155 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 C12orf4Q9NQ89 552 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 KPNA3O00505 521 aaPredicted RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 SEC22BO75396 215 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ERP29P30040 261 aaKnown RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 LHX1P48742 406 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ACTR3P61158 418 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 S100A12P80511 92 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ARMC8Q8IUR7 673 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 SCAIQ8N9R8 606 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 PPP3R2Q96LZ3 170 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 CAB39LQ9H9S4 337 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 NUP50Q9UKX7 468 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 PCDHGA4Q9Y5G9 962 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 FGF10O15520 208 aaPredicted RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ELK3P41970 407 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 POLR2LP62875 67 aaKnown RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 PRKG2Q13237 762 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 CYP2R1Q6VVX0 501 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 ZSCAN18Q8TBC5 510 aaPredicted RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 TTYH1Q9H313 450 aaPredicted RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 FBXO44Q9H4M3 255 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 TMEM260Q9NX78 707 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 PTPN3P26045 913 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 SLC9A4Q6AI14 798 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 LDHDQ86WU2 507 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 METTL6Q8TCB7 284 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 OPTCQ9UBM4 332 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 DMGDHQ9UI17 866 aaKnown RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 USP21Q9UK80 565 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 TAF6LQ9Y6J9 622 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 CNTNAP5Q8WYK1 1306 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 TRAFD1O14545 582 aaPredicted RBP14.45□□□□□ -0.1
COL7A1-201ENST00000328333 SLC22A2O15244 555 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 POLD2P49005 469 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 BIKQ13323 160 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 STAG3L4Q8TBR4 150 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 HTR3CQ8WXA8 447 aa14.45□□□□□ -0.1
COL7A1-201ENST00000328333 IFNGP01579 166 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 FESP07332 822 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 CIAPIN1Q6FI81 312 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 LRRC20Q8TCA0 184 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 MED8Q96G25 268 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 HOPXQ9BPY8 73 aaPredicted RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 C1QTNF7Q9BXJ2 289 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 TRIM38O00635 465 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 ZNF806P0C7X5 589 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 CYP2F1P24903 491 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 ZNF470Q6ECI4 717 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 NELL1Q92832 810 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 MTIF3Q9H2K0 278 aaKnown RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 FMN2Q9NZ56 1722 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 AP4B1Q9Y6B7 739 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 FOXN3O00409 490 aaPredicted RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 COX4I1P13073 169 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 RPL10AP62906 217 aaKnown RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 SPIDRQ14159 915 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 USP7Q93009 1102 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 DBNDD1Q9H9R9 158 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 AAASQ9NRG9 546 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 RTN3O95197 1032 aaPredicted RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 UMPSP11172 480 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 KLK7P49862 253 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 IL2P60568 153 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 CSHL1Q14406 222 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 RRP1BQ14684 758 aaKnown RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms