RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 DDX50Q9BQ39 737 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 FSD1LQ9BXM9 530 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 MRPL4Q9BYD3 311 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 TMEM5Q9Y2B1 443 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 RBM47A0AV96 593 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 USP12O75317 370 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 WARSP23381 471 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 TYK2P29597 1187 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CHKAP35790 457 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CDK9P50750 372 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 HSD17B4P51659 736 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 S100A12P80511 92 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 LPIN1Q14693 890 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ANKRD26P1Q6NSI1 321 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 MZT2BQ6NZ67 158 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ARHGEF19Q8IW93 802 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 FBXW8Q8N3Y1 598 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 LRRC17Q8N6Y2 441 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 TMEM161BQ8NDZ6 487 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PLEKHO2Q8TD55 490 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 UCMAQ8WVF2 138 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 MSTO1Q9BUK6 570 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 C9orf16Q9BUW7 83 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 YIPF2Q9BWQ6 316 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 TEX13BQ9BXU2 312 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 SLC35C2Q9NQQ7 365 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ARL8BQ9NVJ2 186 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 SLC7A8Q9UHI5 535 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 NR2E1Q9Y466 385 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PRKAB1Q9Y478 270 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 HDAC3O15379 428 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CHP2O43745 196 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 T-ENOLP0DO92 83 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ERCC2P18074 760 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 HTR7P34969 479 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PEX3P56589 373 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 GPSM2P81274 684 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 DPYSL3Q14195 570 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 RFX4Q33E94 735 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 COQ5Q5HYK3 327 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 C6orf183Q5T699 404 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 DCAF15Q66K64 600 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ZCCHC8Q6NZY4 707 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 PGM2L1Q6PCE3 622 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CRTC1Q6UUV9 634 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PSMA8Q8TAA3 256 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 TAS1R2Q8TE23 839 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 GANCQ8TET4 914 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 GIPC3Q8TF64 312 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PTCD2Q8WV60 388 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 SLC9A6Q92581 669 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 EBNA1BP2Q99848 306 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 ASB7Q9H672 318 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 HMG20AQ9NP66 347 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CNTN3Q9P232 1028 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 TRPC4Q9UBN4 977 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ZNF225Q9UK10 706 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PNMA8BQ9ULN7 279 aaPredicted RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 TBC1D24Q9ULP9 559 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 RAP2CQ9Y3L5 183 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 HEY1Q9Y5J3 304 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ZNF831Q5JPB2 1677 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FAM92AA1XBS5 289 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 KLRG2A4D1S0 409 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 FOXO6A8MYZ6 492 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FAM86B1E9PN63 330 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MUSKO15146 869 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MDM4O15151 490 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 KPNA6O60684 536 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 EPN2O95208 641 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 RB1P06400 928 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FAM86B2P0C5J1 330 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GSSP48637 474 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 NUDT2P50583 147 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 KPNA1P52294 538 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 SSTP61278 116 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ZNF33AQ06730 810 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 KIZQ2M2Z5 673 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 C7orf31Q8N865 590 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 WNK4Q96J92 1243 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PRKD2Q9BZL6 878 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 INO80BQ9C086 356 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 LRRC40Q9H9A6 602 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 AASDHPPTQ9NRN7 309 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 RBAKQ9NYW8 714 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 MORF4L1Q9UBU8 362 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PHF11Q9UIL8 331 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 SH3D21A4FU49 640 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 AQP12BA6NM10 295 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 H3BM21 787 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 H7C0S8 307 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 BMP10O95393 424 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 POLR2EP19388 210 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 ATP6V1B2P21281 511 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PPP3CCP48454 512 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 NPY2RP49146 381 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MTA1Q13330 715 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 QPRTQ15274 297 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PYDC2Q56P42 97 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms