RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ESRP1Q6NXG1 681 aaKnown RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 BEND5Q7L4P6 421 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 SPNS2Q8IVW8 549 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 KLHDC8BQ8IXV7 354 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 FCRL5Q96RD9 977 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 FTHL17Q9BXU8 183 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 CATSPERBQ9H7T0 1116 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 RBM22Q9NW64 420 aaKnown RBP eCLIP20.39■□□□□ 0.85
VPS53-201ENST00000291074 PRG3Q9Y2Y8 225 aaPredicted RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 MIA3Q5JRA6 1907 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 MATN3O15232 486 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 TYMPP19971 482 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 ZNF33AQ06730 810 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 NOMO2Q5JPE7 1267 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 PKN3Q6P5Z2 889 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 GPR22Q99680 433 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 PCDHB8Q9UN66 801 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 PCDHB12Q9Y5F1 795 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 FGF10O15520 208 aaPredicted RBP20.38■□□□□ 0.85
VPS53-201ENST00000291074 HSPA4LO95757 839 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 AHSGP02765 367 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 AOC1P19801 751 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 GRK4P32298 578 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 CCR10P46092 362 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 CDK7P50613 346 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 PAPOLAP51003 745 aaKnown RBP20.38■□□□□ 0.85
VPS53-201ENST00000291074 ANO4Q32M45 955 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 SLC41A1Q8IVJ1 513 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 GPR152Q8TDT2 470 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 TASP1Q9H6P5 420 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 MAN1C1Q9NR34 630 aa20.38■□□□□ 0.85
VPS53-201ENST00000291074 CA12O43570 354 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 PSMG1O95456 288 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 LMNAP02545 664 aaKnown RBP20.37■□□□□ 0.85
VPS53-201ENST00000291074 ARNTP27540 789 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 NKX3-2P78367 333 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 USP10Q14694 798 aaKnown RBP20.37■□□□□ 0.85
VPS53-201ENST00000291074 TBCCQ15814 346 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 PCID2Q5JVF3 399 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 CLLU1OSQ5K130 101 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 PIK3R6Q5UE93 754 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 TFAP2DQ7Z6R9 452 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.37■□□□□ 0.852e-7■■■■■ 278.5
VPS53-201ENST00000291074 UNKQ9C0B0 810 aaKnown RBP20.37■□□□□ 0.85
VPS53-201ENST00000291074 RHOJQ9H4E5 214 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 DNAJC28Q9NX36 388 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 RPLP2P05387 115 aaKnown RBP20.37■□□□□ 0.85
VPS53-201ENST00000291074 ATP5BP06576 529 aaKnown RBP20.37■□□□□ 0.85
VPS53-201ENST00000291074 RAP1GDS1P52306 607 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 CCDC6Q16204 474 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 PCSK7Q16549 785 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 MFSD6LQ8IWD5 586 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 SCUBE1Q8IWY4 988 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 ULK2Q8IYT8 1036 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 ARHGAP24Q8N264 748 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 TTC9BQ8N6N2 239 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 MAPK15Q8TD08 544 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 KCTD4Q8WVF5 259 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 GATA5Q9BWX5 397 aaPredicted RBP20.37■□□□□ 0.85
VPS53-201ENST00000291074 C1QTNF1Q9BXJ1 281 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 STN1Q9H668 368 aaKnown RBP20.37■□□□□ 0.85
VPS53-201ENST00000291074 DNAJB4Q9UDY4 337 aa20.37■□□□□ 0.85
VPS53-201ENST00000291074 DOCK4Q8N1I0 1966 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 KCNU1A8MYU2 1149 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 PSMD3O43242 534 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 MAGEC1O60732 1142 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 ANXA9O76027 345 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 CHRNGP07510 517 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 ALOX15P16050 662 aaPredicted RBP20.36■□□□□ 0.85
VPS53-201ENST00000291074 USP46P62068 366 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 SLC25A3Q00325 362 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 SREBF2Q12772 1141 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 TRIM68Q6AZZ1 485 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 RTL3Q8N8U3 475 aaKnown RBP20.36■□□□□ 0.85
VPS53-201ENST00000291074 NRG4Q8WWG1 115 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 LINC01599Q8WXQ3 324 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 ACE2Q9BYF1 805 aaPredicted RBP20.36■□□□□ 0.85
VPS53-201ENST00000291074 NOL6Q9H6R4 1146 aaKnown RBP20.36■□□□□ 0.85
VPS53-201ENST00000291074 VWA8A3KMH1 1905 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 TBX10O75333 385 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 SBK3P0C264 359 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 SLC35E2BP0CK96 405 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 NCF2P19878 526 aaPredicted RBP20.36■□□□□ 0.85
VPS53-201ENST00000291074 ADRA1AP35348 466 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 CPOXP36551 454 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 OR1G1P47890 313 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 CSRP3P50461 194 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 MBTPS1Q14703 1052 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 NAA25Q14CX7 972 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 SLC9B1Q4ZJI4 515 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 GLB1LQ6UWU2 654 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 SPATA6LQ8N4H0 392 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 FSD1LQ9BXM9 530 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 COG4Q9H9E3 785 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 SLC7A8Q9UHI5 535 aa20.36■□□□□ 0.85
VPS53-201ENST00000291074 EIF4E1BA6NMX2 242 aaKnown RBP20.35■□□□□ 0.85
VPS53-201ENST00000291074 TRIM13O60858 407 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 TM7SF2O76062 418 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 NUMBP49757 651 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 PEX6Q13608 980 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms