RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 MIF4GDA9UHW6 222 aaKnown RBP12.99□□□□□ -0.33
SS18-202ENST00000269138 ZSCAN12O43309 604 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 MAFKO60675 156 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 CST8O60676 142 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 CLCN6P51797 869 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 RPS14P62263 151 aaKnown RBP12.99□□□□□ -0.33
SS18-202ENST00000269138 ATXN7L2Q5T6C5 722 aaPredicted RBP12.99□□□□□ -0.33
SS18-202ENST00000269138 MEI1Q5TIA1 1274 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 B4GALNT4Q76KP1 1039 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 WDR5BQ86VZ2 330 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 LONP2Q86WA8 852 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 ATPAF2Q8N5M1 289 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 UBL4BQ8N7F7 174 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 FRMD1Q8N878 549 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 CHST14Q8NCH0 376 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 OR2A12Q8NGT7 310 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 RLN3Q8WXF3 142 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 TM6SF2Q9BZW4 377 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 RSPH9Q9H1X1 276 aaPredicted RBP12.99□□□□□ -0.33
SS18-202ENST00000269138 PRDM16Q9HAZ2 1276 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 SP110Q9HB58 689 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 ZSCAN32Q9NX65 697 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 R4GN57 208 aa12.99□□□□□ -0.33
SS18-202ENST00000269138 CXorf51AA0A1B0GTR3 108 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 RNF103O00237 685 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 ZBTB24O43167 697 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 HRO43593 1189 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 PEX11BO96011 259 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 PECAM1P16284 738 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 GARSP41250 739 aaKnown RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 METAP1P53582 386 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 NRLP54845 237 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 GEMIN4P57678 1058 aaKnown RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 IL10RBQ08334 325 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 TFDP2Q14188 446 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 PPP2R5EQ16537 467 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 INO80DQ53TQ3 878 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 CARD16Q5EG05 197 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 FAM182AQ5T1J6 154 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 DPY19L3Q6ZPD9 716 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 MMAAQ8IVH4 418 aaKnown RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 FAM160A2Q8N612 972 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 PCDH20Q8N6Y1 951 aaKnown RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 ZBTB44Q8NCP5 570 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 OR6K2Q8NGY2 324 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 ISG20Q96AZ6 181 aaKnown RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 SIPA1Q96FS4 1042 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 ALS2CR12Q96Q35 445 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 FAM126AQ9BYI3 521 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 OSBPL8Q9BZF1 889 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 CEP44Q9C0F1 390 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 FAM86C1Q9NVL1 165 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 LHX3Q9UBR4 397 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 SARDHQ9UL12 918 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 HCN4Q9Y3Q4 1203 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 CKAP5Q14008 2032 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 NYNRINQ9P2P1 1898 aaKnown RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 WDFY4Q6ZS81 3184 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 MCF2LO15068 1137 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 CTSLP07711 333 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 ZFXP17010 805 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 GKP32189 559 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 RGRP47804 291 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 PSMD8P48556 350 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 PTPN5P54829 565 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 COPS2P61201 443 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 SLC10A7Q0GE19 358 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 ELAVL3Q14576 367 aaKnown RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 RPS6KA1Q15418 735 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 POM121L1PQ3SYA9 428 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 ZNF776Q68DI1 518 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 TRIM58Q8NG06 486 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 PRCCQ92733 491 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 ATOH1Q92858 354 aaPredicted RBP12.98□□□□□ -0.33
SS18-202ENST00000269138 HAUS1Q96CS2 278 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 EXOC2Q96KP1 924 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 LGMNQ99538 433 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 TLR10Q9BXR5 811 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 KCNH6Q9H252 994 aa12.98□□□□□ -0.33
SS18-202ENST00000269138 CACNA1HO95180 2353 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 MUC6Q6W4X9 2439 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 CCDC163A0A0D9SF12 145 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 PLK4O00444 970 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 MUSKO15146 869 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 MID1O15344 667 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 INSIG1O15503 277 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 GJB3O75712 270 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 C7P10643 843 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 CHRNA3P32297 505 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 PTPN7P35236 360 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 CCNHP51946 323 aaPredicted RBP12.97□□□□□ -0.33
SS18-202ENST00000269138 RHOAP61586 193 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 LBRQ14739 615 aaKnown RBP12.97□□□□□ -0.33
SS18-202ENST00000269138 CST6Q15828 149 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 MAP7D1Q3KQU3 841 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 ZNF569Q5MCW4 686 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 BBS12Q6ZW61 710 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 LRRC49Q8IUZ0 686 aa12.97□□□□□ -0.33
SS18-202ENST00000269138 C17orf53Q8N3J3 647 aaPredicted RBP12.97□□□□□ -0.33
SS18-202ENST00000269138 RYBPQ8N488 228 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms