RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SLC51AQ86UW1 340 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 RDH11Q8TC12 318 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 FAM45AQ8TCE6 357 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 COPS5Q92905 334 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 ZFP42Q96MM3 310 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 CEP44Q9C0F1 390 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 NDEL1Q9GZM8 345 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 RERGLQ9H628 205 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 KLHL28Q9NXS3 571 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 FBXO5Q9UKT4 447 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 PLA2G4CQ9UP65 541 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 CASZ1Q86V15 1759 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 LINC00854A0A1B0GVQ3 168 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 H3BMM5 538 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 CABYRO75952 493 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 MED26O95402 600 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 PARNO95453 639 aaKnown RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 TFEBP19484 476 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 ATP6V1C1P21283 382 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 NAA20P61599 178 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 BCL2L1Q07817 233 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 SQLEQ14534 574 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 QPCTQ16769 361 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 ARHGAP17Q68EM7 881 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 PTGR2Q8N8N7 351 aaPredicted RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 LRRC57Q8N9N7 239 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 PTCD3Q96EY7 689 aaKnown RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 LGMNQ99538 433 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 MRPL57Q9BQC6 102 aaKnown RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 ZCCHC2Q9C0B9 1178 aaKnown RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 SEMA4BQ9NPR2 832 aaPredicted RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 ADPRHL2Q9NX46 363 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.89□□□□□ -0.67
CD44-201ENST00000263398 TRPC4Q9UBN4 977 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 CDH9Q9ULB4 789 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 HES2Q9Y543 173 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 PDZK1P1A8MUH7 402 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 PTGES3LE9PB15 166 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 PPP1R11O60927 126 aaPredicted RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 ANPEPP15144 967 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 RAB10P61026 200 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 PURAQ00577 322 aaKnown RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 ACSM2AQ08AH3 577 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 FSCN1Q16658 493 aaKnown RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 TTC23Q5W5X9 447 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 ACSM2BQ68CK6 577 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 AAGABQ6PD74 315 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 TTC7BQ86TV6 843 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 GPC2Q8N158 579 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 JOSD2Q8TAC2 188 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 STARD8Q92502 1023 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 CDCA5Q96FF9 252 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 TMEM109Q9BVC6 243 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 FAM126AQ9BYI3 521 aaPredicted RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 IKZF4Q9H2S9 585 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 FBXO6Q9NRD1 293 aaPredicted RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 STK39Q9UEW8 545 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 KLHL3Q9UH77 587 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 DUSP12Q9UNI6 340 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 KNDC1Q76NI1 1749 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 IGSF6O95976 241 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 VGLL4Q14135 290 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 BNIPLQ7Z465 357 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 SLC41A1Q8IVJ1 513 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 ADHFE1Q8IWW8 467 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 NKD2Q969F2 451 aaPredicted RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 GRIP2Q9C0E4 1043 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 SPAG4Q9NPE6 437 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 ZMYM5Q9UJ78 669 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 INVSQ9Y283 1065 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 TRIM38O00635 465 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 RNASEH1O60930 286 aaKnown RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 FGFR1P11362 822 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 CDC25CP30307 473 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 GRIA3P42263 894 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 SCNN1GP51170 649 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 DCTN2Q13561 401 aaKnown RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 NOMO1Q15155 1222 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 FAM187BQ17R55 369 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 PTPN20Q4JDL3 420 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 STXBP5Q5T5C0 1151 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 LIPMQ5VYY2 423 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 PACS1Q6VY07 963 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 B3GNT6Q6ZMB0 384 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 ADAM2Q99965 735 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 ST6GALNAC4Q9H4F1 302 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 PCDH18Q9HCL0 1135 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 SALL4Q9UJQ4 1053 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 ZNF112Q9UJU3 913 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 PRPF19Q9UMS4 504 aaKnown RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 R3HDM2Q9Y2K5 976 aaKnown RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 MTF2Q9Y483 593 aaPredicted RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 PCDHAC2Q9Y5I4 1007 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 PRR23AA6NEV1 266 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 IFRD1O00458 451 aaPredicted RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 KPNA4O00629 521 aaPredicted RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 ZBTB14O43829 449 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 ZMPSTE24O75844 475 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 DGKAP23743 735 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 RPS7P62081 194 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms