RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 RLN3Q8WXF3 142 aa17.12■□□□□ 0.33
SDCBP-201ENST00000260130 PRCCQ92733 491 aaPredicted RBP17.12■□□□□ 0.33
SDCBP-201ENST00000260130 PTPRN2Q92932 1015 aa17.12■□□□□ 0.33
SDCBP-201ENST00000260130 SIPA1Q96FS4 1042 aa17.12■□□□□ 0.33
SDCBP-201ENST00000260130 PCDH18Q9HCL0 1135 aa17.12■□□□□ 0.33
SDCBP-201ENST00000260130 HPCAL4Q9UM19 191 aa17.12■□□□□ 0.33
SDCBP-201ENST00000260130 INVSQ9Y283 1065 aa17.12■□□□□ 0.33
SDCBP-201ENST00000260130 RCCD1A6NED2 376 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 ZNF217O75362 1048 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 SRCP12931 536 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 GJC1P36383 396 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 P2RY2P41231 377 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 SLC1A1P43005 524 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 CDH6P55285 790 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 ARF5P84085 180 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 DPYSQ14117 519 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 KRT81Q14533 505 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 PARP15Q460N3 678 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 CCDC70Q6NSX1 233 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 METTL3Q86U44 580 aaKnown RBP17.11■□□□□ 0.33
SDCBP-201ENST00000260130 CXorf51AA0A1B0GTR3 108 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 RASA4BC9J798 803 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 K7ERQ8 282 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 DCLK1O15075 740 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 RASA4O43374 803 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 KDELR3O43731 214 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 LMNAP02545 664 aaKnown RBP17.11■□□□□ 0.33
SDCBP-201ENST00000260130 IVLP07476 585 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 PLA2G5P39877 138 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 NDST2P52849 883 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 MAP7D1Q3KQU3 841 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 PRR23BQ6ZRT6 265 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 SUMF1Q8NBK3 374 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 KCTD6Q8NC69 237 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 CSPG4P5Q96PW8 444 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 LRRC19Q9H756 370 aa17.11■□□□□ 0.33
SDCBP-201ENST00000260130 C7P10643 843 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 VAV1P15498 845 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 ARSEP51690 589 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 ZNF354CQ86Y25 554 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 GOLGA6L1Q8N7Z2 621 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 TRIM58Q8NG06 486 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 HMCESQ96FZ2 354 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 SPACA7Q96KW9 195 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 CAPZA3Q96KX2 299 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 LACRTQ9GZZ8 138 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 KLC2Q9H0B6 622 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 RSPH9Q9H1X1 276 aaPredicted RBP17.1■□□□□ 0.33
SDCBP-201ENST00000260130 ITM2CQ9NQX7 267 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 RCOR3Q9P2K3 495 aaPredicted RBP17.1■□□□□ 0.33
SDCBP-201ENST00000260130 FANCMQ8IYD8 2048 aa17.1■□□□□ 0.33
SDCBP-201ENST00000260130 SMAD6O43541 496 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 BUB1BO60566 1050 aaPredicted RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 RNASEH1O60930 286 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 ACADMP11310 421 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 AMPD1P23109 780 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 IL4RP24394 825 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 SERPINH1P50454 418 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 RPS14P62263 151 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 PDK2Q15119 407 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 C11orf74Q86VG3 221 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 MAP7D3Q8IWC1 876 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 FRMD1Q8N878 549 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 SALL4Q9UJQ4 1053 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 RAB23Q9ULC3 237 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 SMG5Q9UPR3 1016 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 BTNL10A8MVZ5 291 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 PJA2O43164 708 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 CD160O95971 181 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 CD48P09326 243 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 COMTP21964 271 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 TNNT3P45378 269 aaPredicted RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 GEMIN4P57678 1058 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 ZBTB16Q05516 673 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 SERINC3Q13530 473 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 ELAVL3Q14576 367 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 ZFYVE27Q5T4F4 411 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 CACUL1Q86Y37 369 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 STK40Q8N2I9 435 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 FAM160A2Q8N612 972 aaPredicted RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 LZTR1Q8N653 840 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 CELF6Q96J87 481 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 CALR3Q96L12 384 aaKnown RBP17.09■□□□□ 0.33
SDCBP-201ENST00000260130 FAM129BQ96TA1 746 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 SLC39A8Q9C0K1 460 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 JRKLQ9Y4A0 524 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 ALG6Q9Y672 507 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 DUSP10Q9Y6W6 482 aa17.09■□□□□ 0.33
SDCBP-201ENST00000260130 ZSCAN5CA6NGD5 496 aaPredicted RBP17.08■□□□□ 0.33
SDCBP-201ENST00000260130 DPYSL3Q14195 570 aa17.08■□□□□ 0.33
SDCBP-201ENST00000260130 LRRC38Q5VT99 294 aa17.08■□□□□ 0.33
SDCBP-201ENST00000260130 AFMIDQ63HM1 303 aa17.08■□□□□ 0.33
SDCBP-201ENST00000260130 ZNF776Q68DI1 518 aaPredicted RBP17.08■□□□□ 0.33
SDCBP-201ENST00000260130 Q6ZVU0 165 aa17.08■□□□□ 0.33
SDCBP-201ENST00000260130 KBTBD6Q86V97 674 aa17.08■□□□□ 0.33
SDCBP-201ENST00000260130 RUBCNQ92622 972 aa17.08■□□□□ 0.33
SDCBP-201ENST00000260130 ZC3H10Q96K80 434 aaKnown RBP17.08■□□□□ 0.33
SDCBP-201ENST00000260130 CALN1Q9BXU9 219 aa17.08■□□□□ 0.33
SDCBP-201ENST00000260130 CD93Q9NPY3 652 aa17.08■□□□□ 0.33
SDCBP-201ENST00000260130 KLHL11Q9NVR0 708 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms