RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 NDST3O95803 873 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 KCNA6P17658 529 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 ALDH7A1P49419 539 aaKnown RBP13.21□□□□□ -0.29
MSH2-201ENST00000233146 ART3Q13508 389 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 PCLAFQ15004 111 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 HIST2H2ACQ16777 129 aaPredicted RBP13.21□□□□□ -0.29
MSH2-201ENST00000233146 TBC1D10BQ4KMP7 808 aaPredicted RBP13.21□□□□□ -0.29
MSH2-201ENST00000233146 EPHX4Q8IUS5 362 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 CYGBQ8WWM9 190 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 MAGED4Q96JG8 741 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 EFCAB1Q9HAE3 211 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 NPAP1Q9NZP6 1156 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 DNMT3LQ9UJW3 386 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 ARFGEF1Q9Y6D6 1849 aa13.21□□□□□ -0.29
MSH2-201ENST00000233146 SAC3D1A6NKF1 404 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 SLC22A2O15244 555 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 DAB1O75553 588 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 UPK1BO75841 260 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 GAP43P17677 238 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 EIF2DP41214 584 aaKnown RBP13.21□□□□□ -0.3
MSH2-201ENST00000233146 ARCN1P48444 511 aaKnown RBP13.21□□□□□ -0.3
MSH2-201ENST00000233146 PPIL2Q13356 520 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 BRMS1LQ5PSV4 323 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 DESI1Q6ICB0 168 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 ERMP1Q7Z2K6 904 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 LINC00523Q86TU6 105 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 BRSK2Q8IWQ3 736 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 MAPK15Q8TD08 544 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 PPWD1Q96BP3 646 aaKnown RBP13.21□□□□□ -0.3
MSH2-201ENST00000233146 GDF15Q99988 308 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 UCKL1Q9NWZ5 548 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 RAB20Q9NX57 234 aa13.21□□□□□ -0.3
MSH2-201ENST00000233146 SCN7AQ01118 1682 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 A0A1W2PQ72 361 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 CENPXA8MT69 81 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 FAM25AB3EWG3 89 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 FAM25CB3EWG5 89 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 FAM25GB3EWG6 89 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 hCG_1984214I3L0E3 225 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 TADA2AO75478 443 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 DLGAP3O95886 979 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 IMPDH1P20839 514 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 PRKCHP24723 683 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 WEE1P30291 646 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 ATN1P54259 1190 aaPredicted RBP13.2□□□□□ -0.3
MSH2-201ENST00000233146 TRAP1Q12931 704 aaKnown RBP13.2□□□□□ -0.3
MSH2-201ENST00000233146 CTF1Q16619 201 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 YIF1BQ5BJH7 314 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 BROXQ5VW32 411 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 C12orf56Q8IXR9 622 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 LEMD2Q8NC56 503 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.2□□□□□ -0.3
MSH2-201ENST00000233146 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.2□□□□□ -0.36e-7■■■□□ 17.1
MSH2-201ENST00000233146 USTQ9Y2C2 406 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 FER1L6Q2WGJ9 1857 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 C12orf71A8MTZ7 269 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 HDAC3O15379 428 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 SPATA31C1P0DKV0 1188 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 C7P10643 843 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 ICAM2P13598 275 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 HCAR3P49019 387 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 NT5C2P49902 561 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 SPOCD1Q6ZMY3 1216 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 CAND1Q86VP6 1230 aaKnown RBP13.2□□□□□ -0.3
MSH2-201ENST00000233146 SFRP1Q8N474 314 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 TAB3Q8N5C8 712 aaPredicted RBP13.2□□□□□ -0.3
MSH2-201ENST00000233146 RDH13Q8NBN7 331 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 IL17RDQ8NFM7 739 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 RHOXF1Q8NHV9 184 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 LPGAT1Q92604 370 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 MARK4Q96L34 752 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 EYA3Q99504 573 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 C1QTNF7Q9BXJ2 289 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 TCF7L2Q9NQB0 619 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 SMYD2Q9NRG4 433 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 DDX28Q9NUL7 540 aaKnown RBP13.2□□□□□ -0.3
MSH2-201ENST00000233146 MCM9Q9NXL9 1143 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 IL20Q9NYY1 176 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 NUP50Q9UKX7 468 aa13.2□□□□□ -0.3
MSH2-201ENST00000233146 MN1Q10571 1320 aaPredicted RBP13.2□□□□□ -0.3
MSH2-201ENST00000233146 SLC9A3R1O14745 358 aaPredicted RBP13.19□□□□□ -0.3
MSH2-201ENST00000233146 COL6A1P12109 1028 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 GBE1Q04446 702 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 FSTL1Q12841 308 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 BNIP2Q12982 314 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 LAMC2Q13753 1193 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 GALNT3Q14435 633 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 ZFP69Q49AA0 526 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 PMF1Q6P1K2 205 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 USP51Q70EK9 711 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 C10orf107Q8IVU9 208 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 TDRD5Q8NAT2 981 aaKnown RBP13.19□□□□□ -0.3
MSH2-201ENST00000233146 TMEM35BQ8NCS4 154 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 PIK3R3Q92569 461 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 COA7Q96BR5 231 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 ACAT2Q9BWD1 397 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 C8orf4Q9NR00 106 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 DIABLOQ9NR28 239 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 PLSCR3Q9NRY6 295 aa13.19□□□□□ -0.3
MSH2-201ENST00000233146 SFMBT1Q9UHJ3 866 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms