RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 AP2A1O95782 977 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 MPOP05164 745 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 TXNP10599 105 aaKnown RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 DESP17661 470 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 CREB5Q02930 508 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 TMEM62Q0P6H9 643 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ADIGQ0VDE8 80 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 BST2Q10589 180 aaKnown RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 SLC25A52Q3SY17 297 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 TMEM259Q4ZIN3 620 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 KCTD11Q693B1 232 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ZNF280DQ6N043 979 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ZFP1Q6P2D0 407 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ZDHHC17Q8IUH5 632 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 PSTKQ8IV42 348 aaKnown RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 SLC41A1Q8IVJ1 513 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 CEP97Q8IW35 865 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 PNPLA1Q8N8W4 532 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 KDM1BQ8NB78 822 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 CEP70Q8NHQ1 597 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 AFG1LQ8WV93 481 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 NLRP7Q8WX94 980 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 SLCO4A1Q96BD0 722 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 SGF29Q96ES7 293 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 SCYL1Q96KG9 808 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 TXNRD2Q9NNW7 524 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ADA2Q9NZK5 511 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 EPS15L1Q9UBC2 864 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 RUVBL2Q9Y230 463 aaKnown RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 CDYLQ9Y232 598 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 GINS2Q9Y248 185 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 PCDHGA7Q9Y5G6 932 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 SNX10Q9Y5X0 201 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 C9IYK1 514 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 XPO1O14980 1071 aaKnown RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 DCLK1O15075 740 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 STRNO43815 780 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 TRMUO75648 421 aaKnown RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 ZNF286BP0CG31 522 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 HNRNPLP14866 589 aaKnown RBP eCLIP12.59□□□□□ -0.39
NUP88-201ENST00000225696 IGFBP6P24592 240 aaPredicted RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 CDH15P55291 814 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 SMYD5Q6GMV2 418 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 DUS1LQ6P1R4 473 aaKnown RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 CYP2R1Q6VVX0 501 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 STRADAQ7RTN6 431 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 ZC3HC1Q86WB0 502 aaKnown RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 MYO1HQ8N1T3 1032 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 CCNYL1Q8N7R7 359 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 TRPM4Q8TD43 1214 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 EME1Q96AY2 570 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 EIF2AQ9BY44 585 aaKnown RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 CASS4Q9NQ75 786 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 PLK2Q9NYY3 685 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 BFARQ9NZS9 450 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 TLL2Q9Y6L7 1015 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 A0A0G2JMZ2 1700 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 LRRC37A2A6NM11 1700 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 M0QYT0 321 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 NFKBIEO00221 500 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 PGK1P00558 417 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 AHSGP02765 367 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 ERCC2P18074 760 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 CYP2B6P20813 491 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 NR1H2P55055 460 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 PTK2BQ14289 1009 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 USP10Q14694 798 aaKnown RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 MTX3Q5HYI7 312 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 ARHGAP17Q68EM7 881 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 PIGZQ86VD9 579 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 DENND6AQ8IWF6 608 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 EXOC8Q8IYI6 725 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 LINC01465Q8N7H1 131 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 NXNL1Q96CM4 212 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 FTHL17Q9BXU8 183 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 EFCAB1Q9HAE3 211 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 XPR1Q9UBH6 696 aa12.59□□□□□ -0.39
NUP88-201ENST00000225696 MRPL42Q9Y6G3 142 aaKnown RBP12.59□□□□□ -0.39
NUP88-201ENST00000225696 SHROOM3Q8TF72 1996 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 PAPPA2Q9BXP8 1791 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 EEF2KO00418 725 aaKnown RBP12.58□□□□□ -0.4
NUP88-201ENST00000225696 PFDN1O60925 122 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 CNMDO75829 334 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 PSMC3P17980 439 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 NFKB1P19838 968 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 RPL34P49207 117 aaKnown RBP12.58□□□□□ -0.4
NUP88-201ENST00000225696 NDST2P52849 883 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 BCAT1P54687 386 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 MPP1Q00013 466 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 PRKAA1Q13131 559 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 CTBP1Q13363 440 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 PAFAH1B3Q15102 231 aaKnown RBP12.58□□□□□ -0.4
NUP88-201ENST00000225696 PPP1R3AQ16821 1122 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 CNSTQ6PJW8 725 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 TMEM126BQ8IUX1 230 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 CPNE9Q8IYJ1 553 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 TSPAN14Q8NG11 270 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 STYXQ8WUJ0 223 aa12.58□□□□□ -0.4
NUP88-201ENST00000225696 GPR78Q96P69 363 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms