RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CDC7O00311 574 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TIMM44O43615 452 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GATBO75879 557 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ADH1CP00326 375 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 HLA-DRAP01903 254 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RB1P06400 928 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ABCB1P08183 1280 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CYP2C8P10632 490 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CXCR5P32302 372 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MXI1P50539 228 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CYP2J2P51589 502 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 VBP1P61758 197 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NSUN2Q08J23 767 aaKnown RBP eCLIP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FSTL1Q12841 308 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 HNRNPDQ14103 355 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MLC1Q15049 377 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DGUOKQ16854 277 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KCTD21Q4G0X4 260 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MTHFD1LQ6UB35 978 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SLC35F6Q8N357 371 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KCTD4Q8WVF5 259 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CLP1Q92989 425 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 USP7Q93009 1102 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NSL1Q96IY1 281 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SEC16BQ96JE7 1060 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ALKBH4Q9NXW9 302 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GPRC5DQ9NZD1 345 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 STOX2Q9P2F5 926 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SIK3Q9Y2K2 1263 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHGC5Q9Y5F6 944 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 EPN1Q9Y6I3 576 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PBRM1Q86U86 1689 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CCL15-CCL14A0A0B4J2E2 113 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 A0A0G2JMP0 313 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PNMA8CA0A1B0GUJ8 204 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 METTL21EPA6NDL7 271 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 A6NLC8 198 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 POLRMTO00411 1230 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RPS3AP61247 264 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PNOCQ13519 176 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MTMR1Q13613 665 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NFYCQ13952 458 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CCL15Q16663 113 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 LIN54Q6MZP7 749 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NOTUMQ6P988 496 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MAEAQ7L5Y9 396 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 LDHDQ86WU2 507 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 IZUMO1Q8IYV9 350 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RBFAQ8N0V3 343 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PDIK1LQ8N165 341 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PJA1Q8NG27 643 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 OR4M2Q8NGB6 313 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FAM118BQ9BPY3 351 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 VPS4AQ9UN37 437 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DUSP12Q9UNI6 340 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 POFUT2Q9Y2G5 429 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 USP32Q8NFA0 1604 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 UBA6A0AVT1 1052 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KLHL2O95198 593 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MAP3K6O95382 1288 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GH1P01241 217 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SERPINF2P08697 491 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PRPS2P11908 318 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FCGR1AP12314 374 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ACAT1P24752 427 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MMP13P45452 471 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PSEN1P49768 467 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RGS1Q08116 209 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TRIM32Q13049 653 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MAPK14Q16539 360 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RNF19BQ6ZMZ0 732 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF720Q7Z2F6 126 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NELFCDQ8IXH7 590 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NEK7Q8TDX7 302 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SHC3Q92529 594 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SLC9A6Q92581 669 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RNPC3Q96LT9 517 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CGRRF1Q99675 332 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 BHMT2Q9H2M3 363 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TAF1DQ9H5J8 278 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC40Q9H9A6 602 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PDE7BQ9NP56 450 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 USP15Q9Y4E8 981 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CASKIN1Q8WXD9 1431 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 HECTD1Q9ULT8 2610 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ASXL1Q8IXJ9 1541 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NLRP1Q9C000 1473 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CTIFO43310 598 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 COL6A2P12110 1019 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CCNB1P14635 433 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RPL9P32969 192 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CSNK2BP67870 215 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DDR2Q16832 855 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 INSCQ1MX18 579 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 C20orf194Q5TEA3 1177 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF280DQ6N043 979 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 AMIGO1Q86WK6 493 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DDIASQ8IXT1 998 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KIF2BQ8N4N8 673 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms