RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 YJEFN3A6XGL0 299 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 E7ENQ6 273 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 PMM2O15305 246 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 SLC31A1O15431 190 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 CD44P16070 742 aaKnown RBP16.8■□□□□ 0.28
CLN3-264ENST00000637985 TBXAS1P24557 533 aaPredicted RBP16.8■□□□□ 0.28
CLN3-264ENST00000637985 TAS2R38P59533 333 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 CDH18Q13634 790 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 RNF219Q5W0B1 726 aaPredicted RBP16.8■□□□□ 0.28
CLN3-264ENST00000637985 NUGGCQ68CJ6 796 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 ISM2Q6H9L7 571 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 NADSYN1Q6IA69 706 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 C14orf80Q86SX3 495 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 UNC45BQ8IWX7 931 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 ANKRD52Q8NB46 1076 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 NOX5Q96PH1 765 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 MYOCQ99972 504 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 CALN1Q9BXU9 219 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 EPN3Q9H201 632 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 PAXBP1Q9Y5B6 917 aa16.8■□□□□ 0.28
CLN3-264ENST00000637985 BICDL2A1A5D9 508 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 ENO4A6NNW6 628 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 PPP1R3GB7ZBB8 358 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 TULP2O00295 520 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 MOCS3O95396 460 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 PRLRP16471 622 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 FMO5P49326 533 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 STK19P49842 368 aaPredicted RBP16.79■□□□□ 0.28
CLN3-264ENST00000637985 HNRNPKP61978 463 aaKnown RBP eCLIP16.79■□□□□ 0.28
CLN3-264ENST00000637985 MORC3Q14149 939 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 ZNF542PQ5EBM4 170 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 FAM46CQ5VWP2 391 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 TTI2Q6NXR4 508 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 MSANTD2Q6P1R3 559 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 CRTC1Q6UUV9 634 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 ABI3BPQ7Z7G0 1075 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 APCDD1Q8J025 514 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 FAM26EQ8N5C1 309 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 ZNF548Q8NEK5 533 aaPredicted RBP16.79■□□□□ 0.28
CLN3-264ENST00000637985 FRS2Q8WU20 508 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 ABCC13Q9NSE7 274 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 DNAJC28Q9NX36 388 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 KCNK4Q9NYG8 393 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 SALL4Q9UJQ4 1053 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 KIAA1257Q9ULG3 409 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 PPM1HQ9ULR3 514 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 CEP83Q9Y592 693 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 CSNK1G3Q9Y6M4 447 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 ICE1Q9Y2F5 2266 aa16.79■□□□□ 0.28
CLN3-264ENST00000637985 TYW5A2RUC4 315 aaKnown RBP16.78■□□□□ 0.28
CLN3-264ENST00000637985 PLD2O14939 933 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 CASC3O15234 703 aaKnown RBP16.78■□□□□ 0.28
CLN3-264ENST00000637985 P4HA2O15460 535 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 GADD45BO75293 160 aaPredicted RBP16.78■□□□□ 0.28
CLN3-264ENST00000637985 LUC7L3O95232 432 aaKnown RBP16.78■□□□□ 0.28
CLN3-264ENST00000637985 BMP6P22004 513 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 CETN1Q12798 172 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 CLCA4Q14CN2 919 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 IGFBP7Q16270 282 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 ZNF284Q2VY69 593 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 CCDC40Q4G0X9 1142 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 PERM1Q5SV97 790 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 NEK5Q6P3R8 708 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 DSG4Q86SJ6 1040 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 CCDC117Q8IWD4 279 aaPredicted RBP16.78■□□□□ 0.28
CLN3-264ENST00000637985 WDR48Q8TAF3 677 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 NELFBQ8WX92 580 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 KLK6Q92876 244 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 LIN37Q96GY3 246 aaPredicted RBP16.78■□□□□ 0.28
CLN3-264ENST00000637985 FZD3Q9NPG1 666 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 GPR27Q9NS67 375 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 PCDHGA4Q9Y5G9 962 aa16.78■□□□□ 0.28
CLN3-264ENST00000637985 A0A1W2PQU0 124 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 GNA14O95837 355 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 CSF2P04141 144 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 NME1P15531 152 aaKnown RBP16.77■□□□□ 0.28
CLN3-264ENST00000637985 HNRNPA2B1P22626 353 aaKnown RBP16.77■□□□□ 0.28
CLN3-264ENST00000637985 NNMTP40261 264 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 CLDN2P57739 230 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 ADIGQ0VDE8 80 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 MS4A13Q5J8X5 152 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 KLHL10Q6JEL2 608 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 GCNT7Q6ZNI0 430 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 Q6ZSR6 202 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 CFAP52Q8N1V2 620 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 ZNF564Q8TBZ8 553 aaPredicted RBP16.77■□□□□ 0.28
CLN3-264ENST00000637985 OR8D1Q8WZ84 308 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 IPO9Q96P70 1041 aaKnown RBP16.77■□□□□ 0.28
CLN3-264ENST00000637985 DDX50Q9BQ39 737 aaKnown RBP16.77■□□□□ 0.28
CLN3-264ENST00000637985 LRRC4Q9HBW1 653 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 ITPR2Q14571 2701 aa16.77■□□□□ 0.28
CLN3-264ENST00000637985 BLACEA4D250 179 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 XPO1O14980 1071 aaKnown RBP16.76■□□□□ 0.27
CLN3-264ENST00000637985 LIPCP11150 499 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 VDRP11473 427 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 AKT2P31751 481 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 EIF3IQ13347 325 aaKnown RBP16.76■□□□□ 0.27
CLN3-264ENST00000637985 FZD2Q14332 565 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 DRAP1Q14919 205 aaPredicted RBP16.76■□□□□ 0.27
CLN3-264ENST00000637985 NR0B2Q15466 257 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms