RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TMEM130Q8N3G9 435 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 BEST2Q8NFU1 509 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 FNIP1Q8TF40 1166 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 CLEC4DQ8WXI8 215 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 GLMNQ92990 594 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 DACH2Q96NX9 599 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 FDXACB1Q9BRP7 624 aaPredicted RBP11.21□□□□□ -0.62
CLN3-244ENST00000636147 SPAG4Q9NPE6 437 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 CHRAC1Q9NRG0 131 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 HOXC10Q9NYD6 342 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 VTI1BQ9UEU0 232 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 CIDEBQ9UHD4 219 aa11.21□□□□□ -0.62
CLN3-244ENST00000636147 NEMP2A6NFY4 417 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 H2AFYO75367 372 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 ALDOAP04075 364 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 NCAM1P13591 858 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 HDCP19113 662 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 MRPS15P82914 257 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 GNA12Q03113 381 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 NAPEPLDQ6IQ20 393 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 UGT2A3Q6UWM9 527 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 SPPL2CQ8IUH8 684 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 ZCCHC7Q8N3Z6 543 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 SLC4A11Q8NBS3 891 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 PIWIL1Q96J94 861 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 BRD8Q9H0E9 1235 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 ZFYVE28Q9HCC9 887 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 UBAP1Q9NZ09 502 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 SEPT3Q9UH03 358 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 C10orf71Q711Q0 1435 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 C16orf96A6NNT2 1141 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 AP3B1O00203 1094 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 SNRPB2P08579 225 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 ATP6V1B2P21281 511 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 PRKCHP24723 683 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 CACNB2Q08289 660 aaPredicted RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 PPP1R26Q5T8A7 1209 aaPredicted RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 LIPMQ5VYY2 423 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 METTL21CQ5VZV1 264 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 XRRA1Q6P2D8 792 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 OLFML1Q6UWY5 402 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 ADGRG6Q86SQ4 1221 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 ERI1Q8IV48 349 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 BORCS5Q969J3 196 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 MAGEB5Q9BZ81 275 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 QTRT2Q9H974 415 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 TMA7Q9Y2S6 64 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 FAM159BA6NKW6 160 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 YDJCA8MPS7 323 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 BUD23O43709 281 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 RNASEH2AO75792 299 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 MAGP20916 626 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 RPL10P27635 214 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 NR2C2P49116 596 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 CEACAM7Q14002 265 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 SCARA3Q6AZY7 606 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 OGFOD2Q6N063 350 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 PMF1Q6P1K2 205 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 GALNT18Q6P9A2 607 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 TAS1R3Q7RTX0 852 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 MICU2Q8IYU8 434 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 RNF139Q8WU17 664 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 CSPG4P5Q96PW8 444 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 HAPLN3Q96S86 360 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 GPATCH1Q9BRR8 931 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 SLC25A23Q9BV35 468 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 NOL6Q9H6R4 1146 aaKnown RBP11.2□□□□□ -0.62
CLN3-244ENST00000636147 FADS3Q9Y5Q0 445 aa11.2□□□□□ -0.62
CLN3-244ENST00000636147 LINC00854A0A1B0GVQ3 168 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 NCF1BA6NI72 391 aaPredicted RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 NCF1CA8MVU1 366 aaPredicted RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 MAN1A2O60476 641 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 TADA2AO75478 443 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 DLGAP3O95886 979 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 NCF1P14598 390 aaPredicted RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 PTPN1P18031 435 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 LAMC2Q13753 1193 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 DGCR6Q14129 220 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 TRIM25Q14258 630 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 CAPRIN1Q14444 709 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 GRM3Q14832 879 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 SHCBP1Q8NEM2 672 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 MAPK15Q8TD08 544 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 TCF12Q99081 682 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 ACO2Q99798 780 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 ZNF670Q9BS34 389 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 CDHR5Q9HBB8 845 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 ARHGEF4Q9NR80 690 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 SLC8A2Q9UPR5 921 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 PARP4Q9UKK3 1724 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 FAM95CA0A1B0GW59 222 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 DHRS12A0PJE2 317 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 BCLAF3A2AJT9 711 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 C2CD4BA6NLJ0 364 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 PEX10O60683 326 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 KRT75O95678 551 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 LDLRP01130 860 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 TXNP10599 105 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 KCNA2P16389 499 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 UGT1A6P19224 532 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms