RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 MESDQ14696 234 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 PARP15Q460N3 678 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 STK40Q8N2I9 435 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 GPR161Q8N6U8 529 aaKnown RBP21.16■□□□□ 0.98
CLN3-240ENST00000631023 CWC15Q9P013 229 aaKnown RBP21.16■□□□□ 0.98
CLN3-240ENST00000631023 NCKAP1Q9Y2A7 1128 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 PCDHGA5Q9Y5G8 931 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 PCDHA13Q9Y5I0 950 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 TNRC6BQ9UPQ9 1833 aaKnown RBP21.16■□□□□ 0.98
CLN3-240ENST00000631023 ZSCAN5CA6NGD5 496 aaPredicted RBP21.15■□□□□ 0.98
CLN3-240ENST00000631023 KDELR3O43731 214 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 MTA2O94776 668 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 EPN2O95208 641 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 IGLV3-19P01714 112 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 VAV1P15498 845 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 DHPSP49366 369 aaPredicted RBP21.15■□□□□ 0.98
CLN3-240ENST00000631023 SERPINH1P50454 418 aaKnown RBP21.15■□□□□ 0.98
CLN3-240ENST00000631023 NDST2P52849 883 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 MMAAQ8IVH4 418 aaKnown RBP21.15■□□□□ 0.98
CLN3-240ENST00000631023 OR8D1Q8WZ84 308 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 FAM129BQ96TA1 746 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 CEP44Q9C0F1 390 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 CD93Q9NPY3 652 aa21.15■□□□□ 0.98
CLN3-240ENST00000631023 WSB2Q9NYS7 404 aaPredicted RBP21.15■□□□□ 0.98
CLN3-240ENST00000631023 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 TMEM110-MUSTN1A8MSY1 372 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 RASA4BC9J798 803 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 K7ERQ8 282 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 MCF2LO15068 1137 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 ALOX15BO15296 676 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 RASA4O43374 803 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 LRP3O75074 770 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 NDUFA10O95299 355 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 KRT7P08729 469 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 ERCC2P18074 760 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 RECQLP46063 649 aaPredicted RBP21.14■□□□□ 0.98
CLN3-240ENST00000631023 ARF5P84085 180 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 KRT81Q14533 505 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 TCEAL1Q15170 157 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 CST6Q15828 149 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 Q6ZVU0 165 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 TMEFF1Q8IYR6 380 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 DCLK2Q8N568 766 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 TOE1Q96GM8 510 aaKnown RBP21.14■□□□□ 0.98
CLN3-240ENST00000631023 BAG1Q99933 345 aaPredicted RBP21.14■□□□□ 0.98
CLN3-240ENST00000631023 NOL6Q9H6R4 1146 aaKnown RBP21.14■□□□□ 0.98
CLN3-240ENST00000631023 SHROOM3Q8TF72 1996 aa21.14■□□□□ 0.98
CLN3-240ENST00000631023 SOWAHDA6NJG2 315 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 SMAD6O43541 496 aaKnown RBP21.14■□□□□ 0.97
CLN3-240ENST00000631023 BNIP3LO60238 219 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 ADH1BP00325 375 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 IL1BP01584 269 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 SLC8A1P32418 973 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 CREB5Q02930 508 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 FAM46CQ5VWP2 391 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 TXNRD3NBQ6F5E7 133 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 USP30Q70CQ3 517 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 POLNQ7Z5Q5 900 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 LZTR1Q8N653 840 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 GANCQ8TET4 914 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 HMCESQ96FZ2 354 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 ARRDC1-AS1Q9H2J1 176 aa21.14■□□□□ 0.97
CLN3-240ENST00000631023 PABPC3Q9H361 631 aaKnown RBP21.14■□□□□ 0.97
CLN3-240ENST00000631023 ARHGAP42A6NI28 874 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 BUB1O43683 1085 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 C5AR1P21730 350 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 DPP6P42658 865 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 NOP2P46087 812 aaKnown RBP21.13■□□□□ 0.97
CLN3-240ENST00000631023 CDH6P55285 790 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 SERINC3Q13530 473 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 DPYSQ14117 519 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 C22orf39Q6P5X5 142 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 PCDH20Q8N6Y1 951 aaKnown RBP21.13■□□□□ 0.97
CLN3-240ENST00000631023 ISG20Q96AZ6 181 aaKnown RBP21.13■□□□□ 0.97
CLN3-240ENST00000631023 LRRC19Q9H756 370 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 FBXL12Q9NXK8 326 aa21.13■□□□□ 0.97
CLN3-240ENST00000631023 RCOR3Q9P2K3 495 aaPredicted RBP21.13■□□□□ 0.97
CLN3-240ENST00000631023 C1QTNF3-AMACRE9PGA6 284 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 MID1O15344 667 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 SLC1A1P43005 524 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 PSMD8P48556 350 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 SPEM2Q0P670 501 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 PDK2Q15119 407 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 ZFYVE27Q5T4F4 411 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 LYSMD4Q5XG99 296 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 CYP2U1Q7Z449 544 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 FAM124AQ86V42 546 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 MAP7D3Q8IWC1 876 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 KCTD6Q8NC69 237 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 CASKIN2Q8WXE0 1202 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 FOXJ1Q92949 421 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 OMDQ99983 421 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 GPR174Q9BXC1 333 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 BTBD1Q9H0C5 482 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 SGK2Q9HBY8 427 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 PCDH18Q9HCL0 1135 aa21.12■□□□□ 0.97
CLN3-240ENST00000631023 BCLAF3A2AJT9 711 aaKnown RBP21.11■□□□□ 0.97
CLN3-240ENST00000631023 GJC1P36383 396 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 DNA2P51530 1060 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 ZNF33AQ06730 810 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms