RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 C11orf74Q86VG3 221 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 HMGB4Q8WW32 186 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 CSPG4P5Q96PW8 444 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 PSMB7Q99436 277 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 TMEM245Q9H330 911 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 ADGRG1Q9Y653 693 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 LRRD1A4D1F6 860 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 KRT1P04264 644 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 CCDC175P0C221 793 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 ACVRL1P37023 503 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 LIMK1P53667 647 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 ENPP2Q13822 863 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 DPYSQ14117 519 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 PDK2Q15119 407 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 SF3A2Q15428 464 aaKnown RBP18.49■□□□□ 0.55
CLN3-239ENST00000628023 PARP15Q460N3 678 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 PLK5Q496M5 336 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 ACCSLQ4AC99 568 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 ATP13A4Q4VNC1 1196 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 USP39Q53GS9 565 aaKnown RBP18.49■□□□□ 0.55
CLN3-239ENST00000628023 RETSATQ6NUM9 610 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 KIAA1211LQ6NV74 962 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 ATP11CQ8NB49 1132 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 KDM1BQ8NB78 822 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 ARHGEF2Q92974 986 aaKnown RBP18.49■□□□□ 0.55
CLN3-239ENST00000628023 CELF6Q96J87 481 aaKnown RBP18.49■□□□□ 0.55
CLN3-239ENST00000628023 MRGPRX3Q96LB0 322 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 VPS45Q9NRW7 570 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 RCOR3Q9P2K3 495 aaPredicted RBP18.49■□□□□ 0.55
CLN3-239ENST00000628023 TRIM10Q9UDY6 481 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 SUN2Q9UH99 717 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 SALL4Q9UJQ4 1053 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 ALG6Q9Y672 507 aa18.49■□□□□ 0.55
CLN3-239ENST00000628023 MUC22E2RYF6 1773 aaPredicted RBP18.48■□□□□ 0.55
CLN3-239ENST00000628023 A0A1W2PQF6 199 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 TTC34A8MYJ7 566 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 RASA4BC9J798 803 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 RASA4O43374 803 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 PSTPIP1O43586 416 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 ADRB1P08588 477 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 CD48P09326 243 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 KCNA4P22459 653 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 AMPD1P23109 780 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 GLDCP23378 1020 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 MPLP40238 635 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 YBEYP58557 167 aaPredicted RBP18.48■□□□□ 0.55
CLN3-239ENST00000628023 MMRN1Q13201 1228 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 DPYSL3Q14195 570 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 CCDC6Q16204 474 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 LRRC38Q5VT99 294 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 TMCO3Q6UWJ1 677 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 LINGO4Q6UY18 593 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 MDGA1Q8NFP4 955 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 HMCESQ96FZ2 354 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 ZNF670Q9BS34 389 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 DUSP15Q9H1R2 295 aaPredicted RBP18.48■□□□□ 0.55
CLN3-239ENST00000628023 DDX56Q9NY93 547 aaKnown RBP18.48■□□□□ 0.55
CLN3-239ENST00000628023 SLCO3A1Q9UIG8 710 aa18.48■□□□□ 0.55
CLN3-239ENST00000628023 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.48■□□□□ 0.55
CLN3-239ENST00000628023 TPRP12270 2363 aaKnown RBP18.48■□□□□ 0.55
CLN3-239ENST00000628023 A0A0U1RQJ8 604 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 EDDM13A0A1B0GTR0 161 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 ARHGAP42A6NI28 874 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 DFFAO00273 331 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 KRT86O43790 486 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 SERPINB6P35237 376 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 NDST2P52849 883 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 GEMIN4P57678 1058 aaKnown RBP18.47■□□□□ 0.55
CLN3-239ENST00000628023 HNRNPA1L2Q32P51 320 aaKnown RBP18.47■□□□□ 0.55
CLN3-239ENST00000628023 PLA2G2CQ5R387 149 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 KIAA1324Q6UXG2 1013 aaKnown RBP18.47■□□□□ 0.55
CLN3-239ENST00000628023 CACUL1Q86Y37 369 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 UMODL1-AS1Q8N2C9 162 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 LZTR1Q8N653 840 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 KIAA1524Q8TCG1 905 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 TSC1Q92574 1164 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 MYO19Q96H55 970 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 ACE2Q9BYF1 805 aaPredicted RBP18.47■□□□□ 0.55
CLN3-239ENST00000628023 TPSD1Q9BZJ3 242 aa18.47■□□□□ 0.55
CLN3-239ENST00000628023 NOL6Q9H6R4 1146 aaKnown RBP18.47■□□□□ 0.55
CLN3-239ENST00000628023 GRID2IPA4D2P6 1211 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 SRCP12931 536 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 GABRG2P18507 467 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 ARSEP51690 589 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 ARF5P84085 180 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 CREB5Q02930 508 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 ANKRD20A8PQ5CZ79 823 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 RASSF3Q86WH2 238 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 SYCE1Q8N0S2 351 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 SH2D3CQ8N5H7 860 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 NPWQ8N729 165 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 OR2T3Q8NH03 318 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 FAM71BQ8TC56 605 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.46■□□□□ 0.55
CLN3-239ENST00000628023 RAPGEF5Q92565 580 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 PDLIM2Q96JY6 352 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 CNTNAP3BQ96NU0 1288 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 CNTNAP3Q9BZ76 1288 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 MTG2Q9H4K7 406 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 FBRSQ9HAH7 460 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms