RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 LRRC31Q6UY01 552 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 C4orf22Q6V702 233 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ZNF852Q6ZMS4 543 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ARHGAP36Q6ZRI8 547 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 GAREM2Q75VX8 874 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 PPIL6Q8IXY8 311 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 KRT222Q8N1A0 295 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 AGGF1Q8N302 714 aaeCLIP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 SUMF1Q8NBK3 374 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 CCNYQ8ND76 341 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 CLDN23Q96B33 292 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 HDAC11Q96DB2 347 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 CELF6Q96J87 481 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 GORASP1Q9BQQ3 440 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 RPP25Q9BUL9 199 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 CEP41Q9BYV8 373 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 FOXQ1Q9C009 403 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 LTB4R2Q9NPC1 389 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 DLL3Q9NYJ7 618 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 VANGL2Q9ULK5 521 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ASB3Q9Y575 518 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 MYLKQ15746 1914 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 WASH4PA8MWX3 477 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 PRR5-ARHGAP8B1AHC4 643 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 GOLGA8MH3BSY2 632 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 KCNK1O00180 336 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 MAN2B1O00754 1011 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ZNF197O14709 1029 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 GREM1O60565 184 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 STC2O76061 302 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 CNTN5O94779 1100 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 STK10O94804 968 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 OLFM2O95897 454 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 LRG1P02750 347 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 NUDT17P0C025 328 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 SLC6A4P31645 630 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 FAM193AP78312 1265 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 NTHL1P78549 312 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ARHGAP8P85298 464 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ZNF844Q08AG5 666 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 SLC29A2Q14542 456 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 UBXN2BQ14CS0 331 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ANKRD20A2Q5SQ80 823 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 FNBP1LQ5T0N5 605 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ANKRD20A1Q5TYW2 823 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ANKRD20A3Q5VUR7 823 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 RAP1GAP2Q684P5 730 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 FBXL22Q6P050 247 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ZNF534Q76KX8 674 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 HOOK3Q86VS8 718 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 MAML2Q8IZL2 1156 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 HS6ST3Q8IZP7 471 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 LZTR1Q8N653 840 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 RTL3Q8N8U3 475 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ELSPBP1Q96BH3 223 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 CYP2S1Q96SQ9 504 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 RBM15Q96T37 977 aaKnown RBP eCLIP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 IER2Q9BTL4 223 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 BRD8Q9H0E9 1235 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ETNK1Q9HBU6 452 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 RAB6BQ9NRW1 208 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 GKN1Q9NS71 199 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 ZSCAN32Q9NX65 697 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 DONSONQ9NYP3 566 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 NCDNQ9UBB6 729 aa9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 PPARGC1AQ9UBK2 798 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 MRPS23Q9Y3D9 190 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-223ENST00000627587 MIA3Q5JRA6 1907 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 A0A0A0MRY4 1105 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 DRGXA6NNA5 263 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 E7ESA3 106 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 RNF103O00237 685 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 GLULP15104 373 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 PTPN3P26045 913 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 OAS2P29728 719 aaKnown RBP9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 COG7P83436 770 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 CSTF1Q05048 431 aaKnown RBP9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 ZBTB17Q13105 803 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 CBLBQ13191 982 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 MTM1Q13496 603 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 C5orf22Q49AR2 442 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 ZNF567Q8N184 647 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 ELMOD1Q8N336 334 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 GOLGA6L1Q8N7Z2 621 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 ITFG1Q8TB96 612 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 NELL1Q92832 810 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 DNASE1L2Q92874 299 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 ARL8AQ96BM9 186 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 SPATA13Q96N96 652 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 KLF16Q9BXK1 252 aaPredicted RBP9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 SLC39A8Q9C0K1 460 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 MED4Q9NPJ6 270 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 NINJ2Q9NZG7 142 aa9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 DNMT3BQ9UBC3 853 aaKnown RBP9.71□□□□□ -0.85
PDLIM5-223ENST00000627587 CHADO15335 359 aa9.7□□□□□ -0.86
PDLIM5-223ENST00000627587 OPA1O60313 960 aa9.7□□□□□ -0.86
PDLIM5-223ENST00000627587 MAFKO60675 156 aa9.7□□□□□ -0.86
PDLIM5-223ENST00000627587 TTC4O95801 387 aa9.7□□□□□ -0.86
PDLIM5-223ENST00000627587 CD68P34810 354 aaPredicted RBP9.7□□□□□ -0.86
PDLIM5-223ENST00000627587 CCR2P41597 374 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms