RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LHX8Q68G74 356 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 RFWD3Q6PCD5 774 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 RAPH1Q70E73 1250 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 TREML1Q86YW5 311 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 CAPNS2Q96L46 248 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 HAPLN3Q96S86 360 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 CPNE1Q99829 537 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 TACO1Q9BSH4 297 aaKnown RBP10.81□□□□□ -0.68
CUX1-221ENST00000622516 ZCWPW1Q9H0M4 648 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 PNPOQ9NVS9 261 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 SUFUQ9UMX1 484 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 DNAJC16Q9Y2G8 782 aa10.81□□□□□ -0.68
CUX1-221ENST00000622516 KCNU1A8MYU2 1149 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 CCL22O00626 93 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 KLF11O14901 512 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 ENTPD5O75356 428 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 OAZ2O95190 189 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 TGDSO95455 350 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 EOMESO95936 686 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 ENO1P06733 434 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 GM2AP17900 193 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 CNTFP26441 200 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 ETFBP38117 255 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 SKIV2L2P42285 1042 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 MLLT6P55198 1093 aaPredicted RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 MPP1Q00013 466 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 KDSRQ06136 332 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 TAF10Q12962 218 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 MPP3Q13368 585 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 UBAP2LQ14157 1087 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 GRM3Q14832 879 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 TCTN1Q2MV58 587 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 MAP3K21Q5TCX8 1036 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 FAM13CQ8NE31 585 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 ITFG2Q969R8 447 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 MYEOVQ96EZ4 313 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 PPP1R36Q96LQ0 422 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 FSD1LQ9BXM9 530 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 IL22Q9GZX6 179 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 NOL6Q9H6R4 1146 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 CATSPERBQ9H7T0 1116 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 GPBP1L1Q9HC44 474 aaPredicted RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 IPO11Q9UI26 975 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 HBS1LQ9Y450 684 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 VWA8A3KMH1 1905 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 MYO16Q9Y6X6 1858 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 MTSS1O43312 755 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 GLRA3O75311 464 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 SNNO75324 88 aaPredicted RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 C2P06681 752 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 RPL17P18621 184 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 CCNCP24863 283 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 GABRB3P28472 473 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 SPRP35270 261 aaPredicted RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 SLC1A6P48664 564 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 TBX4P57082 545 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 DUSP4Q13115 394 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 GPNMBQ14956 572 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 CNGA3Q16281 694 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 SWT1Q5T5J6 900 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 GRTP1Q5TC63 336 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 RASIP1Q5U651 963 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 RAP1GAP2Q684P5 730 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 NAPEPLDQ6IQ20 393 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 KYAT3Q6YP21 454 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 RINLQ6ZS11 566 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 IGSF8Q969P0 613 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 SCLYQ96I15 445 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 C7orf26Q96N11 449 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 TBL1YQ9BQ87 522 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 SHCBP1LQ9BZQ2 653 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 GLOD4Q9HC38 313 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 NT5MQ9NPB1 228 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 DCDC2Q9UHG0 476 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 RAD54BQ9Y620 910 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 C5orf42Q9H799 3197 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 ENPP3O14638 875 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 UPP2O95045 317 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 AHSGP02765 367 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 PROCP04070 461 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 RPLP2P05387 115 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 CCR10P46092 362 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 SLC10A7Q0GE19 358 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 USP4Q13107 963 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 NOGQ13253 232 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 EML3Q32P44 896 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 BRMS1LQ5PSV4 323 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 RTP2Q5QGT7 225 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 C10orf120Q5SQS8 335 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 MANEALQ5VSG8 457 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 ZNF280DQ6N043 979 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 PRSS55Q6UWB4 352 aaPredicted RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 NAPRTQ6XQN6 538 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 RNF19BQ6ZMZ0 732 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 LRRC8DQ7L1W4 858 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 MON1AQ86VX9 555 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 DCP1BQ8IZD4 617 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 TTC8Q8TAM2 541 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 ZNF398Q8TD17 642 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 KCNV2Q8TDN2 545 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms