RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ZNF510Q9Y2H8 683 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 RAD54BQ9Y620 910 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 CKAP5Q14008 2032 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 PKD1L2Q7Z442 2459 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 LRRD1A4D1F6 860 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 NPC1O15118 1278 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 IRAK2O43187 625 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 STC2O76061 302 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 SLU7O95391 586 aaKnown RBP13.03□□□□□ -0.32
UPF1-208ENST00000600012 IGLV3-25P01717 112 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 RALAP11233 206 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 GNSP15586 552 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 PAFAH1B1P43034 410 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 SLC14A1Q13336 389 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 CA9Q16790 459 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 PLEKHG6Q3KR16 790 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 ZC3H12AQ5D1E8 599 aaKnown RBP13.03□□□□□ -0.32
UPF1-208ENST00000600012 WDR45BQ5MNZ6 344 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 MSANTD2Q6P1R3 559 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 ADAT2Q7Z6V5 191 aaKnown RBP13.03□□□□□ -0.32
UPF1-208ENST00000600012 EXD1Q8NHP7 514 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 ACTRT1Q8TDG2 376 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 BHMTQ93088 406 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 ERLEC1Q96DZ1 483 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 PGAP3Q96FM1 320 aaPredicted RBP13.03□□□□□ -0.32
UPF1-208ENST00000600012 RBM41Q96IZ5 413 aaKnown RBP13.03□□□□□ -0.32
UPF1-208ENST00000600012 NCAPGQ9BPX3 1015 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 DCLK3Q9C098 648 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 TMPRSS4Q9NRS4 437 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 PLK2Q9NYY3 685 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 CLIC5Q9NZA1 410 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 RASAL2Q9UJF2 1139 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 KLK13Q9UKR3 277 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 SLC27A6Q9Y2P4 619 aa13.03□□□□□ -0.32
UPF1-208ENST00000600012 ZFYVE26Q68DK2 2539 aa13.02□□□□□ -0.32
UPF1-208ENST00000600012 SRRM3A6NNA2 597 aaPredicted RBP13.02□□□□□ -0.33
UPF1-208ENST00000600012 WASH3PC4AMC7 463 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 PGRMC1O00264 195 aaKnown RBP13.02□□□□□ -0.33
UPF1-208ENST00000600012 ZRANB2O95218 330 aaKnown RBP eCLIP13.02□□□□□ -0.33
UPF1-208ENST00000600012 PENKP01210 267 aaPredicted RBP13.02□□□□□ -0.33
UPF1-208ENST00000600012 FGGP02679 453 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 CD48P09326 243 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 CD59P13987 128 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 KDELR1P24390 212 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 CD6P30203 668 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 CHKAP35790 457 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 CDH6P55285 790 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 COG7P83436 770 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 C2orf54Q08AI8 447 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 EFEMP1Q12805 493 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 KRT81Q14533 505 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 E2F5Q15329 346 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 LONRF2Q1L5Z9 754 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 ZNF423Q2M1K9 1284 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 ODF2Q5BJF6 829 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 MFSD7Q6UXD7 560 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 SPOCD1Q6ZMY3 1216 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 METTL3Q86U44 580 aaKnown RBP13.02□□□□□ -0.33
UPF1-208ENST00000600012 CEP112Q8N8E3 955 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 MNS1Q8NEH6 495 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 OR2I1PQ8NGU4 316 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 UCMAQ8WVF2 138 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 TEKT4Q8WW24 435 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 MAGEB5Q9BZ81 275 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 SLC6A17Q9H1V8 727 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 DHX35Q9H5Z1 703 aaKnown RBP13.02□□□□□ -0.33
UPF1-208ENST00000600012 PRDM16Q9HAZ2 1276 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 CD93Q9NPY3 652 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 ANLNQ9NQW6 1124 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 AP4E1Q9UPM8 1137 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 STON1Q9Y6Q2 735 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 AKAP13Q12802 2813 aa13.02□□□□□ -0.33
UPF1-208ENST00000600012 DOCK4Q8N1I0 1966 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 TCRBV7S2A1N4TA0A589 114 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 FAM221BA6H8Z2 402 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 C3orf70A6NLC5 250 aaPredicted RBP13.01□□□□□ -0.33
UPF1-208ENST00000600012 I6L893 689 aaPredicted RBP13.01□□□□□ -0.33
UPF1-208ENST00000600012 GJB3O75712 270 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 F9P00740 461 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 KLKB1P03952 638 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 KRT10P13645 584 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 CXCR3P49682 368 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 ARSEP51690 589 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 FAM193AP78312 1265 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 ENPP2Q13822 863 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 FUT11Q495W5 492 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 BOLA3Q53S33 107 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 ERMARDQ5T6L9 678 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 FYB2Q5VWT5 728 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 SND1Q7KZF4 910 aaKnown RBP eCLIP13.01□□□□□ -0.33
UPF1-208ENST00000600012 SLC13A5Q86YT5 568 aaPredicted RBP13.01□□□□□ -0.33
UPF1-208ENST00000600012 RCOR2Q8IZ40 523 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 KCTD6Q8NC69 237 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 RNF34Q969K3 372 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 SERPINB11Q96P15 392 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 KCTD15Q96SI1 283 aaPredicted RBP13.01□□□□□ -0.33
UPF1-208ENST00000600012 HEMGNQ9BXL5 484 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 AP1M1Q9BXS5 423 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 OSBPL8Q9BZF1 889 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 ZDHHC5Q9C0B5 715 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms