RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SERPINE1P05121 402 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 PDHA1P08559 390 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 ADGRG2Q8IZP9 1017 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 SVOPQ8N4V2 548 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 EFCAB3Q8N7B9 438 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 LEMD2Q8NC56 503 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 SRFBP1Q8NEF9 429 aaKnown RBP20.74■□□□□ 0.91
UPF1-207ENST00000599848 KCNN2Q9H2S1 579 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 CNGB3Q9NQW8 809 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 UBIAD1Q9Y5Z9 338 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 APOC4-APOC2K7ER74 178 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 CLDN11O75508 207 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 APOC2P02655 101 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 TFE3P19532 575 aaPredicted RBP20.74■□□□□ 0.91
UPF1-207ENST00000599848 BLKP51451 505 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 PFKPQ01813 784 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 TMEM119Q4V9L6 283 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 MFSD7Q6UXD7 560 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 BCLAF3A2AJT9 711 aaKnown RBP20.74■□□□□ 0.91
UPF1-207ENST00000599848 ELFN1P0C7U0 828 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 FEN1P39748 380 aaKnown RBP20.74■□□□□ 0.91
UPF1-207ENST00000599848 CLCN5P51795 746 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 GRSF1Q12849 480 aaKnown RBP eCLIP20.74■□□□□ 0.91
UPF1-207ENST00000599848 FAM220AQ7Z4H9 259 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 DENND1CQ8IV53 801 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 EID3Q8N140 333 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 TTC29Q8NA56 475 aaPredicted RBP20.74■□□□□ 0.91
UPF1-207ENST00000599848 MYLPFQ96A32 169 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 FAM124BQ9H5Z6 455 aaPredicted RBP20.74■□□□□ 0.91
UPF1-207ENST00000599848 GSAPA4D1B5 854 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 ZNF185O15231 689 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 MYL12AP19105 171 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 AMPD1P23109 780 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 HTR7P34969 479 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 RPIAP49247 311 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 DNAJC3Q13217 504 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 SLC47A2Q86VL8 602 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 DUSP12Q9UNI6 340 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 CCDC81Q6ZN84 652 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 SPATA20Q8TB22 786 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 PRDM8Q9NQV8 689 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 ADAM28Q9UKQ2 775 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 NDUFAF1Q9Y375 327 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 TTI2Q6NXR4 508 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 GET4Q7L5D6 327 aaPredicted RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 GATAD2AQ86YP4 633 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 PEX5LQ8IYB4 626 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 C2orf15Q8WU43 125 aaKnown RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 COLEC10Q9Y6Z7 277 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 GTPBP1O00178 669 aaKnown RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 LDOC1O95751 146 aaPredicted RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 FAM228BP0C875 321 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 CCDC130P13994 396 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 MARK2Q7KZI7 788 aaKnown RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 ADAMTSL2Q86TH1 951 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 IFNLR1Q8IU57 520 aaPredicted RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 AVL9Q8NBF6 648 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 KCNV2Q8TDN2 545 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 GPR20Q99678 358 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 SERHL2Q9H4I8 314 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 SERHLQ9NQF3 203 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 UBP1Q9NZI7 540 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 V9GYQ6 96 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 ADGRA3Q8IWK6 1321 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 UNCXA6NJT0 531 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 IDSP22304 550 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 HNRNPH1P31943 449 aaKnown RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 LSM12Q3MHD2 195 aaKnown RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 TMEM164Q5U3C3 297 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 FAM126BQ8IXS8 530 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 APOL4Q9BPW4 351 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 BDH2Q9BUT1 245 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 MID1IP1Q9NPA3 183 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 DDX20Q9UHI6 824 aaKnown RBP20.73■□□□□ 0.91
UPF1-207ENST00000599848 KCNE2Q9Y6J6 123 aa20.73■□□□□ 0.91
UPF1-207ENST00000599848 ASTN2O75129 1339 aaPredicted RBP20.72■□□□□ 0.91
UPF1-207ENST00000599848 SPATA31C2B4DYI2 1134 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 PDE9AO76083 593 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 PTPN2P17706 415 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 CCND1P24385 295 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 ITGADQ13349 1161 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 TSNQ15631 228 aaKnown RBP20.72■□□□□ 0.91
UPF1-207ENST00000599848 ATP13A5Q4VNC0 1218 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 RFX8Q6ZV50 586 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 PSTKQ8IV42 348 aaKnown RBP20.72■□□□□ 0.91
UPF1-207ENST00000599848 AADATQ8N5Z0 425 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 DIABLOQ9NR28 239 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 HBS1LQ9Y450 684 aaKnown RBP20.72■□□□□ 0.91
UPF1-207ENST00000599848 MEGF6O75095 1541 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 VAPBO95292 243 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 MLYCDO95822 493 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 ATP6V1B2P21281 511 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 VARSP26640 1264 aaKnown RBP20.72■□□□□ 0.91
UPF1-207ENST00000599848 IGFALSP35858 605 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 NEPROQ6NW34 567 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 MIER2Q8N344 545 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 ZNF473Q8WTR7 871 aaKnown RBP20.72■□□□□ 0.91
UPF1-207ENST00000599848 TMEM121Q9BTD3 319 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 DNAJC16Q9Y2G8 782 aa20.72■□□□□ 0.91
UPF1-207ENST00000599848 H3BQF6 201 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms