RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 UPK3BL2E5RIL1 263 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 E9PAM4 449 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 PYCARD-AS1I3L0S3 204 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 EEF2KO00418 725 aaKnown RBP9.7□□□□□ -0.86
TRIM28-208ENST00000597172 TRDMT1O14717 391 aaKnown RBP9.7□□□□□ -0.86
TRIM28-208ENST00000597172 LATS1O95835 1130 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 FGGP02679 453 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 TACR2P21452 398 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 FCARP24071 287 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 SLC11A2P49281 568 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 IRAK1P51617 712 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 SGSHP51688 502 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 FAM193AP78312 1265 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 USP4Q13107 963 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 MTA1Q13330 715 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 KLF1Q13351 362 aaPredicted RBP9.7□□□□□ -0.86
TRIM28-208ENST00000597172 TUBB2AQ13885 445 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 SIX1Q15475 284 aaPredicted RBP9.7□□□□□ -0.86
TRIM28-208ENST00000597172 TFDP3Q5H9I0 405 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 SEL1L2Q5TEA6 688 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 KAZNQ674X7 775 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 SLC9A4Q6AI14 798 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 RFWD3Q6PCD5 774 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 C1orf228Q6PIY5 440 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 RFX8Q6ZV50 586 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 CCDC50Q8IVM0 306 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 BBS7Q8IWZ6 715 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 ZNF670Q9BS34 389 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 TUBB2BQ9BVA1 445 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 LINC00597Q9H2U6 94 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 L2HGDHQ9H9P8 463 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 ARHGEF4Q9NR80 690 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 RCOR3Q9P2K3 495 aaPredicted RBP9.7□□□□□ -0.86
TRIM28-208ENST00000597172 PPARGC1AQ9UBK2 798 aaKnown RBP9.7□□□□□ -0.86
TRIM28-208ENST00000597172 DKK4Q9UBT3 224 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 VANGL2Q9ULK5 521 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 SH3BP1Q9Y3L3 701 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 MFHAS1Q9Y4C4 1052 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 FLNCQ14315 2725 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 MGAQ8IWI9 3026 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 THADAQ6YHU6 1953 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 H3BRJ5 948 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 DCLK1O15075 740 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 TSPAN3O60637 253 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 CST8O60676 142 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 CNTN5O94779 1100 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 WISP1O95388 367 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 PSMC3P17980 439 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ERCC2P18074 760 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ARL4AP40617 200 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ABCG1P45844 678 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 MAPK8P45983 427 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ZNF135P52742 658 aaPredicted RBP9.69□□□□□ -0.86
TRIM28-208ENST00000597172 SLC10A2Q12908 348 aaPredicted RBP9.69□□□□□ -0.86
TRIM28-208ENST00000597172 WHAMMP3Q1A5X7 153 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 LONRF2Q1L5Z9 754 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ALFQ53S48 1182 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ODF2Q5BJF6 829 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ACBD5Q5T8D3 534 aaPredicted RBP9.69□□□□□ -0.86
TRIM28-208ENST00000597172 BBS12Q6ZW61 710 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ADAT2Q7Z6V5 191 aaKnown RBP9.69□□□□□ -0.86
TRIM28-208ENST00000597172 NLRP14Q86W24 1093 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 CHSY1Q86X52 802 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 DDX42Q86XP3 938 aaKnown RBP eCLIP9.69□□□□□ -0.86
TRIM28-208ENST00000597172 RFX6Q8HWS3 928 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ADGRG2Q8IZP9 1017 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 LGI2Q8N0V4 545 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 CFAP52Q8N1V2 620 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 SYNPOQ8N3V7 929 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 CPXM2Q8N436 756 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 PLD5Q8N7P1 536 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 TTC16Q8NEE8 873 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 MSANTD3Q96H12 275 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 EPAS1Q99814 870 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 MAK16Q9BXY0 300 aaKnown RBP9.69□□□□□ -0.86
TRIM28-208ENST00000597172 KLC2Q9H0B6 622 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 NDFIP2Q9NV92 336 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 MPP6Q9NZW5 540 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 RNF14Q9UBS8 474 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ZNF212Q9UDV6 495 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 ZNF510Q9Y2H8 683 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 R3HDM2Q9Y2K5 976 aaKnown RBP9.69□□□□□ -0.86
TRIM28-208ENST00000597172 POLQO75417 2590 aa9.69□□□□□ -0.86
TRIM28-208ENST00000597172 HEPACAM2A8MVW5 462 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 WASH4PA8MWX3 477 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 PGRMC1O00264 195 aaKnown RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 TJP3O95049 919 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 EPHB2P29323 1055 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 HTR7P34969 479 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 CETN2P41208 172 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 TPI1P60174 286 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 RPS24P62847 133 aaKnown RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 LMAN2Q12907 356 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 TFDP2Q14188 446 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 PAFAH1B3Q15102 231 aaKnown RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 NCBP2-AS2Q69YL0 99 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 RWDD4Q6NW29 188 aaKnown RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 VITQ6UXI7 678 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 NPNTQ6UXI9 565 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 LRRC31Q6UY01 552 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms