RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 TPH1P17752 444 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 SERPINB3P29508 390 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 TYK2P29597 1187 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 RASSF2P50749 326 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 CSE1LP55060 971 aaKnown RBP20.04■□□□□ 0.8
CLIP3-206ENST00000593074 ELAVL2Q12926 359 aaKnown RBP20.04■□□□□ 0.8
CLIP3-206ENST00000593074 FASTKD1Q53R41 847 aaKnown RBP20.04■□□□□ 0.8
CLIP3-206ENST00000593074 HSP90AA5PQ58FG0 334 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 C16orf46Q6P387 395 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 FUT10Q6P4F1 479 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 CCDC91Q7Z6B0 441 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 ZNF683Q8IZ20 524 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 CRIPAKQ8N1N5 446 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 UTP4Q969X6 686 aaKnown RBP20.04■□□□□ 0.8
CLIP3-206ENST00000593074 SCLYQ96I15 445 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 TBL1YQ9BQ87 522 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 C20orf27Q9GZN8 174 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 NOD2Q9HC29 1040 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 TBKBP1A7MCY6 615 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 HAUS5O94927 633 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 STX3Q13277 289 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 PCLAFQ15004 111 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 FAM91A1Q658Y4 838 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 FSTL4Q6MZW2 842 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 CCDC117Q8IWD4 279 aaPredicted RBP20.04■□□□□ 0.8
CLIP3-206ENST00000593074 TTC9BQ8N6N2 239 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 TMEM175Q9BSA9 504 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 THAP1Q9NVV9 213 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 MPP6Q9NZW5 540 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 OGDHLQ9ULD0 1010 aa20.04■□□□□ 0.8
CLIP3-206ENST00000593074 HBS1LQ9Y450 684 aaKnown RBP20.04■□□□□ 0.8
CLIP3-206ENST00000593074 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 MT-CYBP00156 380 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 GALTP07902 379 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 FGF3P11487 239 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 CPB1P15086 417 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 NMBRP28336 390 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 MNAT1P51948 309 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 MPP3Q13368 585 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 PPM1JQ5JR12 505 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 CRLF3Q8IUI8 442 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 ARID3BQ8IVW6 561 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 RNF208Q9H0X6 261 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 ZNF395Q9H8N7 513 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 PRDM5Q9NQX1 630 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 FBXO6Q9NRD1 293 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 C20orf96Q9NUD7 363 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 HCSTQ9UBK5 93 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 BAIAP2L1Q9UHR4 511 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 NT5C1B-RDH14C9J2C7 533 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 HLA-DQB2P05538 268 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 ADRA1AP35348 466 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 PAPOLAP51003 745 aaKnown RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 ATN1P54259 1190 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 GEMP55040 296 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 CCL23P55773 120 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 TBX4P57082 545 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 IRX4P78413 519 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 PDPK2PQ6A1A2 396 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 DENND5AQ6IQ26 1287 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 ZCCHC23Q6ZST2 131 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 CMC1Q7Z7K0 106 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 UMODL1-AS1Q8N2C9 162 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 HIPK3Q9H422 1215 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 NOL6Q9H6R4 1146 aaKnown RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 CD248Q9HCU0 757 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 CLIC5Q9NZA1 410 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 MAGED2Q9UNF1 606 aaPredicted RBP20.03■□□□□ 0.8
CLIP3-206ENST00000593074 STK38LQ9Y2H1 464 aa20.03■□□□□ 0.8
CLIP3-206ENST00000593074 C2orf71A6NGG8 1288 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 H7C4K7 107 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 TIMM44O43615 452 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 YWHAQP27348 245 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 GPR17Q13304 367 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 HSF5Q4G112 596 aaPredicted RBP20.02■□□□□ 0.8
CLIP3-206ENST00000593074 FATE1Q969F0 183 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 AZIN2Q96A70 460 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 PTCD3Q96EY7 689 aaKnown RBP20.02■□□□□ 0.8
CLIP3-206ENST00000593074 ZNF778Q96MU6 729 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 TUBB6Q9BUF5 446 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 NSMCE4AQ9NXX6 385 aa20.02■□□□□ 0.8
CLIP3-206ENST00000593074 PPARGC1AQ9UBK2 798 aaKnown RBP20.02■□□□□ 0.8
CLIP3-206ENST00000593074 PARNO95453 639 aaKnown RBP20.01■□□□□ 0.79
CLIP3-206ENST00000593074 CXCL10P02778 98 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 CCL5P13501 91 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 NDST2P52849 883 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 RPL10AP62906 217 aaKnown RBP20.01■□□□□ 0.79
CLIP3-206ENST00000593074 ZBTB16Q05516 673 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 SMARCB1Q12824 385 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 ANO4Q32M45 955 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 MS4A13Q5J8X5 152 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 PCID2Q5JVF3 399 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 CLEC14AQ86T13 490 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 IPMKQ8NFU5 416 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 SPPL2BQ8TCT7 592 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 GPR152Q8TDT2 470 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 TLE6Q9H808 572 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 TMEM216Q9P0N5 145 aa20.01■□□□□ 0.79
CLIP3-206ENST00000593074 COPG2Q9UBF2 871 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms