RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 DUSP4Q13115 394 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 BMPR2Q13873 1038 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 SETDB1Q15047 1291 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 TCTN1Q2MV58 587 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 PCID2Q5JVF3 399 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 FAM182AQ5T1J6 154 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 ARTNQ5T4W7 220 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 MROH9Q5TGP6 573 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 SNX30Q5VWJ9 437 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 TPGS2Q68CL5 300 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 PDPK2PQ6A1A2 396 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 CGB2Q6NT52 195 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 POTEHQ6S545 545 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 FAM47EQ6ZV65 393 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 CCDC91Q7Z6B0 441 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 RNF168Q8IYW5 571 aaPredicted RBP11.47□□□□□ -0.57
LIG3-204ENST00000585740 NDUFAF2Q8N183 169 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 MICALL1Q8N3F8 863 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 TTC9BQ8N6N2 239 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 CNTD1Q8N815 330 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 GABPB2Q8TAK5 448 aaPredicted RBP11.47□□□□□ -0.57
LIG3-204ENST00000585740 USP33Q8TEY7 942 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 IGSF21Q96ID5 467 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 FAM111AQ96PZ2 611 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 KIFC1Q9BW19 673 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 SLC25A51Q9H1U9 297 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 RXFP1Q9HBX9 757 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 RBM22Q9NW64 420 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIG3-204ENST00000585740 NUDT5Q9UKK9 219 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 SLC27A5Q9Y2P5 690 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 CDY1Q9Y6F8 540 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 CAPN7Q9Y6W3 813 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 NT5C1B-RDH14C9J2C7 533 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 ANKRD65E5RJM6 399 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 TIMM44O43615 452 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 TLR5O60602 858 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 UGT1A9O60656 530 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 EFCAB14O75071 495 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 ATP5HO75947 161 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 VNN2O95498 520 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 MPOP05164 745 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 ITGA2BP08514 1039 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 PAMP19021 973 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 SCTRP47872 440 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 PPP3CCP48454 512 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 POLD2P49005 469 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 SERPINB8P50452 374 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 ATN1P54259 1190 aaPredicted RBP11.46□□□□□ -0.57
LIG3-204ENST00000585740 CRADDP78560 199 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 PDE1BQ01064 536 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 TLE2Q04725 743 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 IL10RBQ08334 325 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 ILF2Q12905 390 aaKnown RBP11.46□□□□□ -0.57
LIG3-204ENST00000585740 PARP15Q460N3 678 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 C5orf22Q49AR2 442 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 SPDYAQ5MJ70 313 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 RASIP1Q5U651 963 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 KIAA1841Q6NSI8 718 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 KLHDC10Q6PID8 442 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 RSPO2Q6UXX9 243 aaPredicted RBP11.46□□□□□ -0.57
LIG3-204ENST00000585740 CCDC63Q8NA47 563 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 ANKLE1Q8NAG6 615 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 STKLD1Q8NE28 680 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 PPHLN1Q8NEY8 458 aaKnown RBP11.46□□□□□ -0.57
LIG3-204ENST00000585740 ISL2Q96A47 359 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 AZIN2Q96A70 460 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 RBBP8Q99708 897 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 HERC2P3Q9BVR0 1158 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 TSSK1BQ9BXA7 367 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 TRIM55Q9BYV6 548 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 PPP1R12CQ9BZL4 782 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 PRKD2Q9BZL6 878 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 CWH43Q9H720 699 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 UGT1A7Q9HAW7 530 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 UGT1A10Q9HAW8 530 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 UGT1A8Q9HAW9 530 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 SP110Q9HB58 689 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 VPS45Q9NRW7 570 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 PCMTD2Q9NV79 361 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 DNMT3LQ9UJW3 386 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 MAFFQ9ULX9 164 aa11.46□□□□□ -0.57
LIG3-204ENST00000585740 CHD5Q8TDI0 1954 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 ALPK3Q96L96 1907 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 ZCWPW2A0A1B0GU75 182 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 ABHD14A-ACY1A0A1B0GW23 586 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 WDR91A4D1P6 747 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 CFAP73A6NFT4 308 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 F5H5T6 163 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 ATP9BO43861 1147 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 USP12O75317 370 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 SOD2P04179 222 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 HLA-DQB2P05538 268 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 ERVK-10P10266 1014 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 TACR2P21452 398 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 ATP5C1P36542 298 aaKnown RBP11.45□□□□□ -0.58
LIG3-204ENST00000585740 SKIV2L2P42285 1042 aaKnown RBP11.45□□□□□ -0.58
LIG3-204ENST00000585740 SLC11A2P49281 568 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 LIMK2P53671 638 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 CDK18Q07002 472 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 UGP2Q16851 508 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms