RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 RRN3Q9NYV6 651 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 CDH22Q9UJ99 828 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 ICKQ9UPZ9 632 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 OSGIN2Q9Y236 505 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 GDAQ9Y2T3 454 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 SQORQ9Y6N5 450 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 C17orf100A8MU93 164 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 MDM4O15151 490 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 HBP1O60381 514 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 TMCC1O94876 653 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 CBX6O95503 412 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 DDAH2O95865 285 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 IFNA2P01563 188 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 FGF2P09038 288 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 TNFRSF1BP20333 461 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 HNF1BP35680 557 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 GJC1P36383 396 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 MTNR1AP48039 350 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 PTGR1Q14914 329 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 MAP3K21Q5TCX8 1036 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 LRRTM4Q86VH4 590 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 FAM217AQ8IXS0 508 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 LRRC57Q8N9N7 239 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 HERVK_113Q902F9 699 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 VCPIP1Q96JH7 1222 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 TEFMQ96QE5 360 aaKnown RBP4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 NPLQ9BXD5 320 aaPredicted RBP4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 ZDHHC7Q9NXF8 308 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 TBC1D14Q9P2M4 693 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 RAP2CQ9Y3L5 183 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 SLC4A4Q9Y6R1 1079 aa4.92□□□□□ -1.62
SMCHD1-204ENST00000581226 MST1RQ04912 1400 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 A0A0A0MQY5 61 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 TARSL2A2RTX5 802 aaKnown RBP4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 OR6C68A6NDL8 312 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 B4DGG1 531 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 TBXAS1P24557 533 aaPredicted RBP4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 CNTFP26441 200 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 TNFSF8P32971 234 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 TBL3Q12788 808 aaKnown RBP4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 ZNF260Q3ZCT1 412 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 LEXMQ3ZCV2 418 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 SYTL3Q4VX76 610 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 GJB7Q6PEY0 223 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 BBS12Q6ZW61 710 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 WDR5BQ86VZ2 330 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 HDAC7Q8WUI4 952 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 LPAR1Q92633 364 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 SH3KBP1Q96B97 665 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 MAELQ96JY0 434 aaKnown RBP4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 B3GNT4Q9C0J1 378 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 FAM234AQ9H0X4 552 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 TTC12Q9H892 705 aaPredicted RBP4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 SAGE1Q9NXZ1 904 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 HDAC6Q9UBN7 1215 aa4.91□□□□□ -1.62
SMCHD1-204ENST00000581226 LOC102724159A0A0B4J2E5 919 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 GAGE12JA6NER3 117 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 MYMKA6NI61 221 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 RRN3P2A6NIE6 340 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 SH2D7A6NKC9 451 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 IL1AP01583 271 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 KLKB1P03952 638 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 CD72P21854 359 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 SCP2P22307 547 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 PTPN9P43378 593 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 CCR5P51681 352 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 CLCNKBP51801 687 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 TMPRSS3P57727 454 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 PPATQ06203 517 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 CHRNDQ07001 517 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 PWP2Q15269 919 aaKnown RBP4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 WDR45BQ5MNZ6 344 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 Q5PR19 223 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 WASHC2DQ5SRD0 308 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 ATG16L1Q676U5 607 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 NAPEPLDQ6IQ20 393 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 PARM1Q6UWI2 310 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 CAMK1DQ8IU85 385 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 GHDCQ8N2G8 530 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 SETD9Q8NE22 299 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 PPM1EQ8WY54 764 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 INPP5DQ92835 1189 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 CD180Q99467 661 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 TAOK3Q9H2K8 898 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 MROH8Q9H579 483 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 CXorf56Q9H5V9 222 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 ALKBH4Q9NXW9 302 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 NLKQ9UBE8 527 aa4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 PLEKHB1Q9UF11 243 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-204ENST00000581226 H0YGN5 161 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 STMND1H3BQB6 276 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 NCAM2O15394 837 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 RNMTO43148 476 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 CRYABP02511 175 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 POLBP06746 335 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 UNGP13051 313 aaPredicted RBP4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 POLD2P49005 469 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 CCT4P50991 539 aaKnown RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms