RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ADH5P11766 374 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 TYRP14679 529 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 FOSL2P15408 326 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 TPSB2P20231 275 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 ACVRL1P37023 503 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 EIF2DP41214 584 aaKnown RBP15.58■□□□□ 0.08
SS18-215ENST00000580642 MRPS25P82663 173 aaKnown RBP15.58■□□□□ 0.08
SS18-215ENST00000580642 PRPSAP1Q14558 356 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 NAA30Q147X3 362 aaPredicted RBP15.58■□□□□ 0.08
SS18-215ENST00000580642 TPSAB1Q15661 275 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 SLC14A2Q15849 920 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 RALGPS1Q5JS13 557 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 RNASEH2BQ5TBB1 312 aaKnown RBP15.58■□□□□ 0.08
SS18-215ENST00000580642 HIBCHQ6NVY1 386 aaPredicted RBP15.58■□□□□ 0.08
SS18-215ENST00000580642 PID1Q7Z2X4 250 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 KIAA0907Q7Z7F0 614 aaPredicted RBP15.58■□□□□ 0.08
SS18-215ENST00000580642 GLIS1Q8NBF1 620 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 MCUQ8NE86 351 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 TTC16Q8NEE8 873 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 WFIKKN2Q8TEU8 576 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 MYLIPQ8WY64 445 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 IFT81Q8WYA0 676 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 GBA3Q9H227 469 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 TRPV5Q9NQA5 729 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 RAB6BQ9NRW1 208 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 ZDHHC18Q9NUE0 388 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 SEPT3Q9UH03 358 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 VPS28Q9UK41 221 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 ATP8A1Q9Y2Q0 1164 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 AAR2Q9Y312 384 aaKnown RBP15.58■□□□□ 0.08
SS18-215ENST00000580642 FARP1Q9Y4F1 1045 aaPredicted RBP15.58■□□□□ 0.08
SS18-215ENST00000580642 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 NEDD8-MDP1E9PL57 170 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 MBTPS2O43462 519 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 ZMPSTE24O75844 475 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 ANXA9O76027 345 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 CYP17A1P05093 508 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 H2AFXP16104 143 aaPredicted RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 CARSP49589 748 aaKnown RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 SARNPP82979 210 aaKnown RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 HLTFQ14527 1009 aaKnown RBP eCLIP15.57■□□□□ 0.08
SS18-215ENST00000580642 LBRQ14739 615 aaKnown RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 E2F5Q15329 346 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 TRIP13Q15645 432 aaPredicted RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 PLEKHG6Q3KR16 790 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 LEXMQ3ZCV2 418 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 FSCBQ5H9T9 825 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 HABP4Q5JVS0 413 aaKnown RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 IZUMO3Q5VZ72 239 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 ARMC3Q5W041 872 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 ALG1LQ6GMV1 187 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 ZNF354CQ86Y25 554 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 DEFB123Q8N688 67 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 OR7D4Q8NG98 312 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 CCDC110Q8TBZ0 833 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 GUCD1Q96NT3 240 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 PSKH2Q96QS6 385 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 FCRL5Q96RD9 977 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 SPON2Q9BUD6 331 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 TRMT61BQ9BVS5 477 aaKnown RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 PHF7Q9BWX1 381 aaPredicted RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 TRIM31Q9BZY9 425 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 EPC1Q9H2F5 836 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 DPH5Q9H2P9 285 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 C10orf88Q9H8K7 445 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 ECT2Q9H8V3 914 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 VPS45Q9NRW7 570 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 RBM22Q9NW64 420 aaKnown RBP eCLIP15.57■□□□□ 0.087e-7■■■□□ 14.8
SS18-215ENST00000580642 UBA2Q9UBT2 640 aaPredicted RBP15.57■□□□□ 0.08
SS18-215ENST00000580642 CDH22Q9UJ99 828 aa15.57■□□□□ 0.08
SS18-215ENST00000580642 CDH23Q9H251 3354 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ESYT3A0FGR9 886 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 GRXCR2A6NFK2 248 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 J3KR12 359 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 SCAMP3O14828 347 aaKnown RBP15.56■□□□□ 0.08
SS18-215ENST00000580642 TIMM44O43615 452 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 PPFIA2O75334 1257 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ETS1P14921 441 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 KCNA5P22460 613 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ECHS1P30084 290 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 CSKP41240 450 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 MMP13P45452 471 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ITGA8P53708 1063 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 PLTPP55058 493 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 NSUN2Q08J23 767 aaKnown RBP eCLIP15.56■□□□□ 0.08
SS18-215ENST00000580642 LMAN2Q12907 356 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ZBTB17Q13105 803 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 HTR4Q13639 388 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 SLMAPQ14BN4 828 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 SPDYCQ5MJ68 293 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ZDHHC24Q6UX98 284 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ARHGAP36Q6ZRI8 547 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 RELL1Q8IUW5 271 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ETFBKMTQ8IXQ9 262 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 AHI1Q8N157 1196 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ZCCHC9Q8N567 271 aaKnown RBP15.56■□□□□ 0.08
SS18-215ENST00000580642 CCDC33Q8N5R6 958 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 CNTD1Q8N815 330 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 NAT8LQ8N9F0 302 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 OR52K2Q8NGK3 314 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms