RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GOSR1O95249 250 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 AMHP03971 560 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 ATP5BP06576 529 aaKnown RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 GLI1P08151 1106 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 SNRPA1P09661 255 aaKnown RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 RARGP13631 454 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 SLC6A2P23975 617 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 CCND3P30281 292 aaPredicted RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 BSGP35613 385 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 TNNT2P45379 298 aaPredicted RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 MEOX1P50221 254 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 CDK7P50613 346 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 PDE6CP51160 858 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 PRKAG1P54619 331 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 RAD23AP54725 363 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 CDH15P55291 814 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 FAM3BP58499 235 aaPredicted RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 UBXN1Q04323 297 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 SIGLEC14Q08ET2 396 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 TOP3AQ13472 1001 aaPredicted RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 GRAPQ13588 217 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 PCOLCEQ15113 449 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 HLFQ16534 295 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 NRN1LQ496H8 165 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 CRELD2Q6UXH1 353 aaPredicted RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 EPHX4Q8IUS5 362 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 THNSL1Q8IYQ7 743 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 ULK2Q8IYT8 1036 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 LRRC71Q8N4P6 559 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 GPR150Q8NGU9 434 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 GRAPLQ8TC17 118 aaPredicted RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 PPP2R3CQ969Q6 453 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 VPS33AQ96AX1 596 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 APOL6Q9BWW8 343 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 TLR10Q9BXR5 811 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 RNF32Q9H0A6 362 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 MRPL15Q9P015 296 aaKnown RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 C5AR2Q9P296 337 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 SLC25A10Q9UBX3 287 aaPredicted RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 LIMA1Q9UHB6 759 aaKnown RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 PCDHB7Q9Y5E2 793 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 PHIPQ8WWQ0 1821 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 AGAP5A6NIR3 686 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 LIPT2A6NK58 231 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 AGPSO00116 658 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 CD3EAPO15446 510 aaKnown RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 TBX10O75333 385 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 PDE8BO95263 885 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 SLU7O95391 586 aaKnown RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 IGHDP01880 384 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 PEPDP12955 493 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 MYOGP15173 224 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ATP5F1P24539 256 aaPredicted RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 THPOP40225 353 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 PBX3P40426 434 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 HNF4AP41235 474 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ETV4P43268 484 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 GZMKP49863 264 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 TOB1P50616 345 aaPredicted RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 ZNF134P52741 427 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 BPIFB4P59827 614 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ADAM17P78536 824 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 RBP5P82980 135 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 SRSF1Q07955 248 aaKnown RBP eCLIP6.11□□□□□ -1.437e-9■■□□□ 13.7
VPS53-219ENST00000576019 NEXNQ0ZGT2 675 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 AP1B1Q10567 949 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 TBL3Q12788 808 aaKnown RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 FHL3Q13643 280 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 IRF3Q14653 427 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ZNF569Q5MCW4 686 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ATXN7L2Q5T6C5 722 aaPredicted RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 UBAP2Q5T6F2 1119 aaKnown RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 ANKS6Q68DC2 871 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 TRIM68Q6AZZ1 485 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 DCLRE1AQ6PJP8 1040 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 SPRED2Q7Z698 418 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ADGRG6Q86SQ4 1221 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 LINC00346Q8IVM7 164 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 SPARTQ8N0X7 666 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ANKRD53Q8N9V6 530 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 MBD3L2Q8NHZ7 208 aaPredicted RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 ZCCHC10Q8TBK6 192 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 TMEM171Q8WVE6 324 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 CCDC47Q96A33 483 aaKnown RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 SLC7A6OSQ96CW6 309 aaPredicted RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 CCDC120Q96HB5 630 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ZNF845Q96IR2 970 aaPredicted RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 ZBTB45Q96K62 511 aaPredicted RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 HIST1H2AAQ96QV6 131 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 SPAG5Q96R06 1193 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ABHD1Q96SE0 405 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 NUDT22Q9BRQ3 303 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ERVMER34-1Q9H9K5 563 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 TMLHEQ9NVH6 421 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ETAA1Q9NY74 926 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 ZNF70Q9UC06 446 aaPredicted RBP6.11□□□□□ -1.43
VPS53-219ENST00000576019 CDYLQ9Y232 598 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 NEU2Q9Y3R4 380 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 DNHD1Q96M86 4753 aa6.11□□□□□ -1.43
VPS53-219ENST00000576019 RALGAPA2Q2PPJ7 1873 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms