RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RHOCP08134 193 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 CHRNA3P32297 505 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 CLCN1P35523 988 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 KRT9P35527 623 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 ZNF211Q13398 564 aaPredicted RBP21.59■■□□□ 1.05
VPS53-216ENST00000574029 SLC47A2Q86VL8 602 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 SLC25A45Q8N413 288 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 ATP11CQ8NB49 1132 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 TMIEQ8NEW7 156 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 OR2A12Q8NGT7 310 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 NT5C3BQ969T7 300 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 CCDC114Q96M63 670 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 C2orf49Q9BVC5 232 aaPredicted RBP21.59■■□□□ 1.05
VPS53-216ENST00000574029 TKTL2Q9H0I9 626 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 CHMP5Q9NZZ3 219 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 VPS51Q9UID3 782 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 DNAJC12Q9UKB3 198 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 FARP1Q9Y4F1 1045 aaPredicted RBP21.59■■□□□ 1.05
VPS53-216ENST00000574029 KNTC1P50748 2209 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 A0A1W2PQU0 124 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 DRGXA6NNA5 263 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 K7ERQ8 282 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 FOXN3O00409 490 aaPredicted RBP21.58■■□□□ 1.05
VPS53-216ENST00000574029 TRIM38O00635 465 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 SIGLEC6O43699 453 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 TFE3P19532 575 aaPredicted RBP21.58■■□□□ 1.05
VPS53-216ENST00000574029 SEMG2Q02383 582 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 CCDC15Q0P6D6 951 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 SETD3Q86TU7 594 aaPredicted RBP21.58■■□□□ 1.05
VPS53-216ENST00000574029 ARRDC3Q96B67 414 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 PGAP3Q96FM1 320 aaPredicted RBP21.58■■□□□ 1.05
VPS53-216ENST00000574029 SYNCQ9H7C4 482 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 PLCB1Q9NQ66 1216 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.58■■□□□ 1.05
VPS53-216ENST00000574029 KIAA1468Q9P260 1216 aa21.58■■□□□ 1.05
VPS53-216ENST00000574029 KPNA3O00505 521 aaPredicted RBP21.57■■□□□ 1.04
VPS53-216ENST00000574029 SLC31A1O15431 190 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 SMAD6O43541 496 aaKnown RBP21.57■■□□□ 1.04
VPS53-216ENST00000574029 THEGLP0DJG4 465 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 PRLRP16471 622 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 ITPKBP27987 946 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 SULT1E1P49888 294 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 CLCN6P51797 869 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 INSM1Q01101 510 aaPredicted RBP21.57■■□□□ 1.04
VPS53-216ENST00000574029 KCNMA1Q12791 1236 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 ZNF284Q2VY69 593 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 HORMAD1Q86X24 394 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 DCAF4L2Q8NA75 395 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 C1orf74Q96LT6 269 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 KLHL11Q9NVR0 708 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 STAP1Q9ULZ2 295 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 CLCA2Q9UQC9 943 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 SNX10Q9Y5X0 201 aa21.57■■□□□ 1.04
VPS53-216ENST00000574029 A0A0D9SEW6 157 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 RNF103O00237 685 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 F9P00740 461 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 PRNPP04156 253 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 PNMA6AP0CW24 399 aaPredicted RBP21.56■■□□□ 1.04
VPS53-216ENST00000574029 GLDCP23378 1020 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 DGKAP23743 735 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 RRM1P23921 792 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 CDH5P33151 784 aaPredicted RBP21.56■■□□□ 1.04
VPS53-216ENST00000574029 E2F1Q01094 437 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 ARTNQ5T4W7 220 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 ACBD5Q5T8D3 534 aaPredicted RBP21.56■■□□□ 1.04
VPS53-216ENST00000574029 LRRC69Q6ZNQ3 347 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 FAM71AQ8IYT1 594 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 DCBLD1Q8N8Z6 715 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 CHST14Q8NCH0 376 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 OR4C6Q8NH72 309 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 SNIP1Q8TAD8 396 aaKnown RBP21.56■■□□□ 1.04
VPS53-216ENST00000574029 KLK6Q92876 244 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 MYOCQ99972 504 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 TMEM51Q9NW97 253 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 PAXBP1Q9Y5B6 917 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 DOCK4Q8N1I0 1966 aa21.56■■□□□ 1.04
VPS53-216ENST00000574029 IGLV3-10A0A075B6K4 115 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 HNRNPA2B1P22626 353 aaKnown RBP21.55■■□□□ 1.04
VPS53-216ENST00000574029 SCNN1AP37088 669 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 MTIF2P46199 727 aaKnown RBP21.55■■□□□ 1.04
VPS53-216ENST00000574029 GABRB2P47870 512 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 BPIFB4P59827 614 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 RNASE9P60153 205 aaKnown RBP21.55■■□□□ 1.04
VPS53-216ENST00000574029 DEUP1Q05D60 604 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 SLC25A52Q3SY17 297 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 DPY19L2P1Q6NXN4 242 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 LRRC31Q6UY01 552 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 LINGO4Q6UY18 593 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 ERN2Q76MJ5 926 aaKnown RBP21.55■■□□□ 1.04
VPS53-216ENST00000574029 TMEM35BQ8NCS4 154 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 UBL7Q96S82 380 aaPredicted RBP21.55■■□□□ 1.04
VPS53-216ENST00000574029 TBCBQ99426 244 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 HDAC8Q9BY41 377 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 PRORYQ9H606 182 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 DYRK4Q9NR20 520 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 UCKL1Q9NWZ5 548 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 MPP6Q9NZW5 540 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 IL36AQ9UHA7 158 aa21.55■■□□□ 1.04
VPS53-216ENST00000574029 ZFR2Q9UPR6 939 aaKnown RBP21.55■■□□□ 1.04
VPS53-216ENST00000574029 EIF4E1BA6NMX2 242 aaKnown RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms