RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OR6B2Q6IFH4 312 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3CQ6IPX1 549 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 NAPEPLDQ6IQ20 393 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 GBP6Q6ZN66 633 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 C11orf57Q6ZUT1 292 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 Q6ZVU0 165 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TRIM69Q86WT6 500 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 FAM71AQ8IYT1 594 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3Q8IZP1 549 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 SLC25A45Q8N413 288 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 EID2Q8N6I1 236 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 PDCD7Q8N8D1 485 aaKnown RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 TMEM145Q8NBT3 493 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 OR2A12Q8NGT7 310 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 PIP4K2CQ8TBX8 421 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 ARRDC3Q96B67 414 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 PGAP3Q96FM1 320 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 CNDP2Q96KP4 475 aaKnown RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 RPRD1AQ96P16 312 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 TRIM62Q9BVG3 475 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 KDM4CQ9H3R0 1056 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 GDF3Q9NR23 364 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 AASDHPPTQ9NRN7 309 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 VPS51Q9UID3 782 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 DNAJC12Q9UKB3 198 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 ZFR2Q9UPR6 939 aaKnown RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 UNC13CQ8NB66 2214 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 SCN8AQ9UQD0 1980 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 IGLV3-10A0A075B6K4 115 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 A0A0D9SEW6 157 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 LY6G6EA0A0G2JKS1 128 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 FAM170AA1A519 330 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 E9PAM4 449 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 M0QYT0 321 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 TRIM38O00635 465 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 ALOX15BO15296 676 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 CLDN11O75508 207 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 RFPL3O75679 317 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 ZMPSTE24O75844 475 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 CD160O95971 181 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 ITGAVP06756 1048 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 C1SP09871 688 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 SLC2A3P11169 496 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 ABCB4P21439 1286 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 RRM1P23921 792 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 ITPKBP27987 946 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 FLT3P36888 993 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 USP8P40818 1118 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 CDH4P55283 916 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 SFSWAPQ12872 951 aaKnown RBP6.89□□□□□ -1.31
VPS53-213ENST00000572334 TARDBPQ13148 414 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS53-213ENST00000572334 NME3Q13232 169 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 FGL2Q14314 439 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 CAMK4Q16566 473 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 ZNF284Q2VY69 593 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 RAB6CQ53S08 254 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 C2CD6Q53TS8 623 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 RABGAP1LQ5R372 815 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 RNF219Q5W0B1 726 aaPredicted RBP6.89□□□□□ -1.31
VPS53-213ENST00000572334 SMYD5Q6GMV2 418 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 IQCHQ86VS3 1027 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 TMPRSS12Q86WS5 348 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 XYLT1Q86Y38 959 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 SLC22A18ASQ8N1D0 253 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 CHST14Q8NCH0 376 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 RFFLQ8WZ73 363 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 OR8D1Q8WZ84 308 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 LRIG1Q96JA1 1093 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 FAM81BQ96LP2 452 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 NOX5Q96PH1 765 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 NAA15Q9BXJ9 866 aaKnown RBP6.89□□□□□ -1.31
VPS53-213ENST00000572334 TKTL2Q9H0I9 626 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 RAB6CQ9H0N0 254 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 GPR27Q9NS67 375 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 UCKL1Q9NWZ5 548 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 MPP6Q9NZW5 540 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 SLC12A6Q9UHW9 1150 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 TMEM59LQ9UK28 342 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 TPX2Q9ULW0 747 aaKnown RBP6.89□□□□□ -1.31
VPS53-213ENST00000572334 DMTF1Q9Y222 760 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 CEP83Q9Y592 693 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 U3KQA8 63 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 AHCTF1Q8WYP5 2266 aa6.89□□□□□ -1.31
VPS53-213ENST00000572334 UQCRHLA0A096LP55 91 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.88□□□□□ -1.31
VPS53-213ENST00000572334 A0A1W2PQU0 124 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 YKT6O15498 198 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 RNGTTO60942 597 aaKnown RBP6.88□□□□□ -1.31
VPS53-213ENST00000572334 SDC3O75056 442 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 FGFR1OPO95684 399 aaKnown RBP6.88□□□□□ -1.31
VPS53-213ENST00000572334 TPM3P06753 285 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 UQCRHP07919 91 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 PRLRP16471 622 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 ACP1P24666 158 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 CHRNA3P32297 505 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 NNMTP40261 264 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 OXCT1P55809 520 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 ARF5P84085 180 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 INSM1Q01101 510 aaPredicted RBP6.88□□□□□ -1.31
VPS53-213ENST00000572334 PTK2Q05397 1052 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms