RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 TCP11X2Q5H9J9 407 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 TAF3Q5VWG9 929 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 NEK5Q6P3R8 708 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 DHRS13Q6UX07 377 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 ZNF783Q6ZMS7 281 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 ARCQ7LC44 396 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 TMPRSS12Q86WS5 348 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 PDCD7Q8N8D1 485 aaKnown RBP19.18■□□□□ 0.66
CLN3-218ENST00000565688 TMIEQ8NEW7 156 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 MDM1Q8TC05 714 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 HAPLN3Q96S86 360 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 PSMB7Q99436 277 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 STK33Q9BYT3 514 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 NUP62CLQ9H1M0 184 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 GPSM3Q9Y4H4 160 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 LAMA5O15230 3695 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 APC2O95996 2303 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 ATRXP46100 2492 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 E9PAM4 449 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 F8VZ95 297 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 I6L893 689 aaPredicted RBP19.17■□□□□ 0.66
CLN3-218ENST00000565688 SNAP91O60641 907 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 PRNPP04156 253 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 OR1E1P30953 314 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 CHRNA3P32297 505 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 TFAP2DQ7Z6R9 452 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 NOP9Q86U38 636 aaKnown RBP19.17■□□□□ 0.66
CLN3-218ENST00000565688 EID2Q8N6I1 236 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 OR2A12Q8NGT7 310 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 DYRK4Q9NR20 520 aa19.17■□□□□ 0.66
CLN3-218ENST00000565688 ILVBLA1L0T0 632 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 TRABD2BA6NFA1 517 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 KPNA3O00505 521 aaPredicted RBP19.16■□□□□ 0.66
CLN3-218ENST00000565688 RFPL3O75679 317 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 HNF1BP35680 557 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 FLT3P36888 993 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 RECQLP46063 649 aaPredicted RBP19.16■□□□□ 0.66
CLN3-218ENST00000565688 TAS2R38P59533 333 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 CAMK2BQ13554 666 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 PIP5KL1Q5T9C9 394 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 RETSATQ6NUM9 610 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 ZNF677Q86XU0 584 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 SPATS2Q86XZ4 545 aaKnown RBP19.16■□□□□ 0.66
CLN3-218ENST00000565688 EPS8L1Q8TE68 723 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 SAMSN1Q9NSI8 373 aaKnown RBP19.16■□□□□ 0.66
CLN3-218ENST00000565688 MPP6Q9NZW5 540 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 TMEM59LQ9UK28 342 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 SNX10Q9Y5X0 201 aa19.16■□□□□ 0.66
CLN3-218ENST00000565688 GOLGA4Q13439 2230 aaKnown RBP19.16■□□□□ 0.66
CLN3-218ENST00000565688 A0A0D9SEW6 157 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 FAM149AA5PLN7 773 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 GOLGA8SH3BPF8 625 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 K7ERQ8 282 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 SRGAP2O75044 1071 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 CTSLP07711 333 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 RRM1P23921 792 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 NOMO3P69849 1222 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 SLC20A2Q08357 652 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 SFMBT2Q5VUG0 894 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 C22orf39Q6P5X5 142 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 BNIPLQ7Z465 357 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 CPA5Q8WXQ8 436 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 KLHDC7BQ96G42 594 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 PPP1R16AQ96I34 528 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 HDAC8Q9BY41 377 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 ZYG11BQ9C0D3 744 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 IL36AQ9UHA7 158 aa19.15■□□□□ 0.66
CLN3-218ENST00000565688 SMAD6O43541 496 aaKnown RBP19.14■□□□□ 0.65
CLN3-218ENST00000565688 TPM2P07951 284 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 MMEP08473 750 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 ACADVLP49748 655 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 CYP4F3Q08477 520 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 BNIP3Q12983 259 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 DNAJC3Q13217 504 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 ILKQ13418 452 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 C2CD6Q53TS8 623 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 NAA35Q5VZE5 725 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 LINGO4Q6UY18 593 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 FAM131BQ86XD5 332 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 MARCH9Q86YJ5 346 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 TMEM145Q8NBT3 493 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 TSC1Q92574 1164 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 CFAP57Q96MR6 1250 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 SPON2Q9BUD6 331 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 CEP44Q9C0F1 390 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 RETREG1Q9H6L5 497 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 TMPRSS4Q9NRS4 437 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 PPARGC1AQ9UBK2 798 aaKnown RBP19.14■□□□□ 0.65
CLN3-218ENST00000565688 RAXQ9Y2V3 346 aa19.14■□□□□ 0.65
CLN3-218ENST00000565688 CXorf51AA0A1B0GTR3 108 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 A0A1W2PQU0 124 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 CBX4O00257 560 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 SLC31A1O15431 190 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 ENDOD1O94919 500 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 JUPP14923 745 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 AKT2P31751 481 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 ETFBP38117 255 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 ZNF284Q2VY69 593 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 ARL13BQ3SXY8 428 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 TRNP1Q6NT89 227 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms