RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 E2F7Q96AV8 911 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 LRRC39Q96DD0 335 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 TCEAL4Q96EI5 215 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 PGM2Q96G03 612 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 C9orf72Q96LT7 481 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 SERPINB12Q96P63 405 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 TSGA13Q96PP4 275 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 DDX50Q9BQ39 737 aaKnown RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 TRMT61BQ9BVS5 477 aaKnown RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 ZYG11BQ9C0D3 744 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 EPB41L4BQ9H329 900 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 BRD9Q9H8M2 597 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 VPS37BQ9H9H4 285 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 XAB2Q9HCS7 855 aaKnown RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 DNAJC17Q9NVM6 304 aaKnown RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 SEPT10Q9P0V9 454 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 KLHL8Q9P2G9 620 aaPredicted RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 ADAM21Q9UKJ8 722 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 MRPS17Q9Y2R5 130 aaKnown RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 SNX10Q9Y5X0 201 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 DOCK8Q8NF50 2099 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 A0A1W2PRU2 124 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 DRGXA6NNA5 263 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 E7ESA3 106 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 RNF103O00237 685 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 DFFAO00273 331 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 NEBLO76041 1014 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 METTL18O95568 372 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 TBX18O95935 607 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 AGTP01019 485 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 SHBGP04278 402 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 HMBSP08397 361 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 GSTA2P09210 222 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 MLNP12872 115 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 HMGA1P17096 107 aaKnown RBP9.13□□□□□ -0.95
VPS39-207ENST00000563692 CDC25CP30307 473 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 NDST2P52849 883 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 STARD6P59095 220 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 SEMA5AQ13591 1074 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 AUHQ13825 339 aaKnown RBP9.13□□□□□ -0.95
VPS39-207ENST00000563692 UBXN2BQ14CS0 331 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 TEAD2Q15562 447 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 SKIDA1Q1XH10 827 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 ANO4Q32M45 955 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 BBS9Q3SYG4 887 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 CCDC38Q502W7 563 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 TEX44Q53QW1 395 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 TTMPQ5BVD1 217 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 MS4A13Q5J8X5 152 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 FNBP1LQ5T0N5 605 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 MANEALQ5VSG8 457 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 ANKRD22Q5VYY1 191 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 KCTD16Q68DU8 428 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 TANGO2Q6ICL3 276 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 C3orf62Q6ZUJ4 267 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 TAOK1Q7L7X3 1001 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 CCNJLQ8IV13 435 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 RIBC1Q8N443 379 aaPredicted RBP9.13□□□□□ -0.95
VPS39-207ENST00000563692 ATPAF2Q8N5M1 289 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 CCDC33Q8N5R6 958 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 RTL3Q8N8U3 475 aaKnown RBP9.13□□□□□ -0.95
VPS39-207ENST00000563692 ATP11CQ8NB49 1132 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 UHMK1Q8TAS1 419 aaKnown RBP9.13□□□□□ -0.95
VPS39-207ENST00000563692 DEPDC1BQ8WUY9 529 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 NSMCE1Q8WV22 266 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 DNASE1L2Q92874 299 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 IRF7Q92985 503 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 PSMG2Q969U7 264 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 PLD4Q96BZ4 506 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 PWWP2AQ96N64 755 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 ASB16Q96NS5 453 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 NELL2Q99435 816 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 ATXN3LQ9H3M9 355 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 CCSER2Q9H7U1 834 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 EIF2B3Q9NR50 452 aaKnown RBP9.13□□□□□ -0.95
VPS39-207ENST00000563692 FAM86C1Q9NVL1 165 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 PSD3Q9NYI0 1048 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 ZMYM5Q9UJ78 669 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 NOVA2Q9UNW9 492 aaKnown RBP9.13□□□□□ -0.95
VPS39-207ENST00000563692 MFHAS1Q9Y4C4 1052 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 TRIOO75962 3097 aa9.13□□□□□ -0.95
VPS39-207ENST00000563692 TCRBV7S3A2A0A539 114 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 KANSL1LA0AUZ9 987 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 ARHGAP42A6NI28 874 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 ERI2A8K979 691 aaKnown RBP9.12□□□□□ -0.95
VPS39-207ENST00000563692 F5H5T6 163 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 TRDMT1O14717 391 aaKnown RBP9.12□□□□□ -0.95
VPS39-207ENST00000563692 MATN3O15232 486 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 PI15O43692 258 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 CDH16O75309 829 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 IGLV3-27P01718 113 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 DCNP07585 359 aaKnown RBP9.12□□□□□ -0.95
VPS39-207ENST00000563692 VAV1P15498 845 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 GJA1P17302 382 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 PSMC3P17980 439 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 GABRR2P28476 465 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 GDI1P31150 447 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 CCR2P41597 374 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 MMP13P45452 471 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 NRLP54845 237 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms