RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 CDH22Q9UJ99 828 aa3.59□□□□□ -1.83
HMGB1P33-201ENST00000563485 C19orf53Q9UNZ5 99 aaPredicted RBP3.59□□□□□ -1.83
HMGB1P33-201ENST00000563485 RAI2Q9Y5P3 530 aa3.59□□□□□ -1.83
HMGB1P33-201ENST00000563485 SYT5O00445 386 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 VWA5AO00534 786 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 HLA-DQA2P01906 255 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 GNLYP22749 145 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 PRKCHP24723 683 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 MT3P25713 68 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 ITGB8P26012 769 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 SERPINB3P29508 390 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 SERPINA4P29622 427 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 THPOP40225 353 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 COMPP49747 757 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 CLCN5P51795 746 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 AP2B1P63010 937 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 DSC1Q08554 894 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 ALKBH1Q13686 389 aaKnown RBP3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 ZACNQ401N2 412 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 SYTL3Q4VX76 610 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 LRRC24Q50LG9 513 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 KLHL17Q6TDP4 642 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 SYNE3Q6ZMZ3 975 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 ATG16L2Q8NAA4 619 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 CPT1BQ92523 772 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 PIGSQ96S52 555 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 PABPC3Q9H361 631 aaKnown RBP3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 ACAD9Q9H845 621 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 CHST12Q9NRB3 414 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 TXLNGQ9NUQ3 528 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 DOCK7Q96N67 2140 aa3.58□□□□□ -1.84
HMGB1P33-201ENST00000563485 KRT86O43790 486 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 SKAP2O75563 359 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 CLDN7O95471 211 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 DDAH2O95865 285 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 MYZAPP0CAP1 466 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 FCGR1AP12314 374 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 ZNF12P17014 697 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 SERPINF1P36955 418 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 CDH12P55289 794 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 TNFAIP2Q03169 654 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 KIF5AQ12840 1032 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 DCTN1Q14203 1278 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 SCN5AQ14524 2016 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 KRT81Q14533 505 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 TDRD12Q587J7 1177 aaKnown RBP3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 C9orf57Q5W0N0 161 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 DGAT2L7PQ6IED9 249 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 SULT6B1Q6IMI4 303 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 CCSAPQ6IQ19 270 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 C8orf82Q6P1X6 216 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 PGBD2Q6P3X8 592 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 RRAGAQ7L523 313 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 ARMC9Q7Z3E5 817 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 CUZD1Q86UP6 607 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 TRIM74Q86UV6 250 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 TRIM73Q86UV7 250 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 CLIP4Q8N3C7 705 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 NEXN-AS1Q8NBZ9 246 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 FAR1Q8WVX9 515 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 C3orf49Q96BT1 292 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 ZNF333Q96JL9 665 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 PPP1R10Q96QC0 940 aaKnown RBP3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 FRG2BQ96QU4 278 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 WDR12Q9GZL7 423 aaKnown RBP3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 CLPBQ9H078 707 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 UPB1Q9UBR1 384 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 KLQ9UEF7 1012 aa3.57□□□□□ -1.84
HMGB1P33-201ENST00000563485 MST1RQ04912 1400 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 A0A087WYN8 130 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 DDTLA6NHG4 134 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 BTBD18B2RXH4 712 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 ACKR2O00590 384 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 HSPB6O14558 160 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 SYN3O14994 580 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 HNRNPRO43390 633 aaKnown RBP3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 ZBTB11O95625 1053 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 IFIT2P09913 472 aaKnown RBP3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 AVPR2P30518 371 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 CLCNKBP51801 687 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 NUDT6P53370 316 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 TRAF3Q13114 568 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 PDCLQ13371 301 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 PLCB4Q15147 1175 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 PUM3Q15397 648 aaKnown RBP3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 MAP9Q49MG5 647 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 USP43Q70EL4 1123 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 CREB3L2Q70SY1 520 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 C16orf82Q7Z2V1 217 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 FJX1Q86VR8 437 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 CCDC117Q8IWD4 279 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 MIGA1Q8NAN2 632 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 OR14A16Q8NHC5 309 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 SVIPQ8NHG7 77 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 HDAC7Q8WUI4 952 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 SLC35F5Q8WV83 523 aa3.56□□□□□ -1.84
HMGB1P33-201ENST00000563485 TMED6Q8WW62 240 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms