RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 DOCK6Q96HP0 2047 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 RFXAPO00287 272 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 SESN2P58004 480 aaPredicted RBP21.68■■□□□ 1.06
CLN3-209ENST00000561689 HNRNPDQ14103 355 aaKnown RBP21.68■■□□□ 1.06
CLN3-209ENST00000561689 MARC1Q5VT66 337 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 KCTD11Q693B1 232 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 IL31Q6EBC2 164 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 CHST9Q7L1S5 443 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 TMA16Q96EY4 203 aaKnown RBP21.68■■□□□ 1.06
CLN3-209ENST00000561689 CFAP36Q96G28 342 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 MAGEH1Q9H213 219 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 TASP1Q9H6P5 420 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 ARHGAP26Q9UNA1 814 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 MAD1L1Q9Y6D9 718 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 CACNG3O60359 315 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 MT-CYBP00156 380 aaPredicted RBP21.68■■□□□ 1.06
CLN3-209ENST00000561689 RHOCP08134 193 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 PFKLP17858 780 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 ETFBP38117 255 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 IL10RBQ08334 325 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 CBLBQ13191 982 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 PRPSAP1Q14558 356 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 ARHGAP15Q53QZ3 475 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 TTC39BQ5VTQ0 682 aaPredicted RBP21.68■■□□□ 1.06
CLN3-209ENST00000561689 CARNMT1Q8N4J0 409 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 OR52K1Q8NGK4 314 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 SH3RF2Q8TEC5 729 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 SIGLEC10Q96LC7 697 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 TRIM56Q9BRZ2 755 aaKnown RBP21.68■■□□□ 1.06
CLN3-209ENST00000561689 NT5MQ9NPB1 228 aa21.68■■□□□ 1.06
CLN3-209ENST00000561689 MTCL1Q9Y4B5 1905 aaKnown RBP21.67■■□□□ 1.06
CLN3-209ENST00000561689 GFRA2O00451 464 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 PRAMEF11O60813 436 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 MLNP12872 115 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 CRADDP78560 199 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 DUSP6Q16828 381 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 PRSS36Q5K4E3 855 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 TMC5Q6UXY8 1006 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 NSMCE1Q8WV22 266 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 ING5Q8WYH8 240 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 FATE1Q969F0 183 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 FCRL5Q96RD9 977 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 APOL2Q9BQE5 337 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 CCDC77Q9BR77 488 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 ROPN1BQ9BZX4 212 aaPredicted RBP21.67■■□□□ 1.06
CLN3-209ENST00000561689 ROPN1Q9HAT0 212 aaPredicted RBP21.67■■□□□ 1.06
CLN3-209ENST00000561689 ZC3H7BQ9UGR2 993 aaKnown RBP21.67■■□□□ 1.06
CLN3-209ENST00000561689 TBC1D30Q9Y2I9 924 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 PDE4DIPQ5VU43 2346 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 H0Y626 953 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 PIAS1O75925 651 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 SUN1O94901 812 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 CPP00450 1065 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 DDX6P26196 483 aaKnown RBP eCLIP21.67■■□□□ 1.06
CLN3-209ENST00000561689 MAXP61244 160 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 STAT4Q14765 748 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 FSCBQ5H9T9 825 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 CXorf57Q6NSI4 855 aaKnown RBP21.67■■□□□ 1.06
CLN3-209ENST00000561689 SETD3Q86TU7 594 aaPredicted RBP21.67■■□□□ 1.06
CLN3-209ENST00000561689 FAM217AQ8IXS0 508 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 LEMD2Q8NC56 503 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 HJURPQ8NCD3 748 aaPredicted RBP21.67■■□□□ 1.06
CLN3-209ENST00000561689 RIN3Q8TB24 985 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 ZSWIM3Q96MP5 696 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 PIDD1Q9HB75 910 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 CTNNAL1Q9UBT7 734 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 NOVA2Q9UNW9 492 aaKnown RBP21.67■■□□□ 1.06
CLN3-209ENST00000561689 ACTL7AQ9Y615 435 aa21.67■■□□□ 1.06
CLN3-209ENST00000561689 EXOC1LA0A1B0GW35 172 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 ILVBLA1L0T0 632 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 HMGB1P1B2RPK0 211 aaPredicted RBP21.66■■□□□ 1.06
CLN3-209ENST00000561689 GLDCP23378 1020 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 MGAT1P26572 445 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 HOXD9P28356 352 aaPredicted RBP21.66■■□□□ 1.06
CLN3-209ENST00000561689 PHBP35232 272 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 MMP13P45452 471 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 ITKQ08881 620 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 CBX2Q14781 532 aaPredicted RBP21.66■■□□□ 1.06
CLN3-209ENST00000561689 RNF219Q5W0B1 726 aaPredicted RBP21.66■■□□□ 1.06
CLN3-209ENST00000561689 ELMSAN1Q6PJG2 1045 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 TDRD5Q8NAT2 981 aaKnown RBP21.66■■□□□ 1.06
CLN3-209ENST00000561689 VN1R2Q8NFZ6 395 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 FBF1Q8TES7 1133 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 USP13Q92995 863 aaPredicted RBP21.66■■□□□ 1.06
CLN3-209ENST00000561689 LRRC39Q96DD0 335 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 EBNA1BP2Q99848 306 aaKnown RBP21.66■■□□□ 1.06
CLN3-209ENST00000561689 ZNF510Q9Y2H8 683 aa21.66■■□□□ 1.06
CLN3-209ENST00000561689 TYW5A2RUC4 315 aaKnown RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 ERI2A8K979 691 aaKnown RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 RGS16O15492 202 aaPredicted RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 CASC4Q6P4E1 433 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 POTEHQ6S545 545 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 TPGS1Q6ZTW0 290 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 TEX26Q8N6G2 289 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 DDI1Q8WTU0 396 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 SMG7Q92540 1137 aaKnown RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 MRRFQ96E11 262 aaKnown RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 PGM2Q96G03 612 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 MUC3BQ9H195 1237 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 PDFQ9HBH1 243 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms