RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 PTCH2Q9Y6C5 1203 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 RLFQ13129 1914 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 WDR90Q96KV7 1748 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GOLGA6L10A6NI86 522 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 ANKRD65E5RJM6 399 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 E9PMD0 336 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SOCS2O14508 198 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CETN3O15182 167 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CALUO43852 315 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 MED24O75448 989 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 JTBO76095 146 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MTA2O94776 668 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 UFL1O94874 794 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 OAS1P00973 400 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 AFPP02771 609 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 NR3C1P04150 777 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GSTA1P08263 222 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PLA2G4BP0C869 781 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MYZAPP0CAP1 466 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 ACTN1P12814 892 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 AKR1B1P15121 316 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 FERP16591 822 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 HSPA6P17066 643 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GAP43P17677 238 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 DRD4P21917 467 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MUTP22033 750 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 NR2F2P24468 414 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PON1P27169 355 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 RPA1P27694 616 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 HNRNPH1P31943 449 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 CIITAP33076 1130 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SHMT1P34896 483 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 HOXD13P35453 343 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MATR3P43243 847 aaKnown RBP eCLIP2.62□□□□□ -1.99
SPG11-223ENST00000560858 CCT8P50990 548 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CASP5P51878 434 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GTF2A1P52655 376 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 ZNF131P52739 623 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 EIF3BP55884 814 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 PTENP60484 403 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 NOMO3P69849 1222 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GPSM2P81274 684 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MRPS25P82663 173 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 XRCC4Q13426 336 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 DHX34Q14147 1143 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 GIT2Q14161 759 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 KIF22Q14807 665 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 NOMO1Q15155 1222 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 LRRC41Q15345 812 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 RPS6KA1Q15418 735 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CLUL1Q15846 466 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CYP1B1Q16678 543 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 EXOC3L4Q17RC7 722 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 KNOP1Q1ED39 458 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 QRICH1Q2TAL8 776 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 Q4G0T1 1027 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PREPLQ4J6C6 727 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 ANKRD20A8PQ5CZ79 823 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 TNFAIP8L3Q5GJ75 292 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 NOMO2Q5JPE7 1267 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PLAC9Q5JTB6 97 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CEP85LQ5SZL2 805 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 WLSQ5T9L3 541 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 KCTD16Q68DU8 428 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 DUPD1Q68J44 220 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PRR5LQ6MZQ0 368 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 C11orf63Q6NUN7 778 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 ALKBH5Q6P6C2 394 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 ZDHHC24Q6UX98 284 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 Q6ZTC4 211 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MAATS1Q7Z4T9 603 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CCDC91Q7Z6B0 441 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MRPL10Q7Z7H8 261 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 HOOK3Q86VS8 718 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 NLRP14Q86W24 1093 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SFR1Q86XK3 245 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CCDC13Q8IYE1 715 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 ADGRF4Q8IZF3 695 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SYCE1Q8N0S2 351 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PQLC1Q8N2U9 271 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 NXPE1Q8N323 547 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CAMKK1Q8N5S9 505 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 ANKRD13CQ8N6S4 541 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SYT2Q8N9I0 419 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 CNBD1Q8NA66 436 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PRSS3P2Q8NHM4 247 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 LNX1Q8TBB1 728 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 MAGEC3Q8TD91 643 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 TMEM174Q8WUU8 243 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 TBC1D5Q92609 795 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 TAF4BQ92750 862 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CENPTQ96BT3 561 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CCDC17Q96LX7 622 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SPAG5Q96R06 1193 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SRPK1Q96SB4 655 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 CCT8L2Q96SF2 557 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 FIZ1Q96SL8 496 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MYCBPQ99417 103 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 FMO2Q99518 471 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 P2RX7Q99572 595 aaKnown RBP2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms